PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G024054_P02
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 859aa    MW: 91700 Da    PI: 8.2623
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G024054_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.5e-08802851147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        r++W++ E e l+++v ++G g+Wk I    +   + R+  ++k++++++
  GRMZM2G024054_P02 802 RKKWSKIEIETLLEGVDKYGIGNWKDIKLAYPgvfEERSTVDLKDKFRNL 851
                        789********************************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-9800856IPR009057Homeodomain-like
SuperFamilySSF466893.12E-12800852IPR009057Homeodomain-like
PROSITE profilePS512939.363800856IPR017884SANT domain
SMARTSM007171.0E-7801854IPR001005SANT/Myb domain
PfamPF002492.4E-6802851IPR001005SANT/Myb domain
CDDcd116609.39E-19803853No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MVDGPFVIFR LSDNAYLLVG EVLKKIVALA PFFCCHFINE LARSMQSLTL CAMKELRLYE  60
NSEKALLSST SANGTAILRV VQALSSLVST LQDRKDPEQP AEKDHSDAVS QISEINTALD  120
ALWLELSNCI SKIESSSEYA SNLTPASASA ATLTAGVAPP LPAGTQNRRT QGLLGRSGIR  180
RRGAAGFGIG DGAEVARANL PEVTGAAGFA GGAQRDLAAA TQSCASSPIY GDGAFASTVY  240
PSPKRWAADL PNHQELKSKF LSRTSARRPA NLMALVDAKA AGASTSTVAA APTVEHLLFL  300
VVLDGVETPI HEGTLYGSAG GTVTVTGPGQ LSADGLESVL VRGGGTGAGA VRFTLCADAA  360
AEGVGAACFE RCGAARVEGA REVSVSSCRA VEVERAGRVT LDRCRDARLR GGGALRATRC  420
RRADVESFGG VRLARCKAAR ADWCGTVEVE LCRAVDVRRC GAVTGERCRV VNAAGCGSVE  480
VARAVINMVE EEQPYPAAHP QQHCLVVSHI GVGITVGIVP ITMPPLPAAD DLLILEFIAS  540
NRRIPHAVFN SFIASQSPPS AFSRTSQRLR KALVLRALDA ALYTVGASCS SSLLLHKARK  600
VLADPDAAAC FPHQIPFTEN EENDEARAAV ADLKRLLDLE WANLPPSTLE LVAGDGSHQT  660
GAAADHTMRT KLRLFAKREI LAKPVQVGSA SHQSIRTQVA DNASNANKAD GARRDEAHPS  720
NSNVNYEADS DRESMVGHQN ASVKGAEGQL SEKSVFTSKK RVLVERIPKW DSSDDDQPVR  780
KRKLDPFERK PYPSPTCAYK IRKKWSKIEI ETLLEGVDKY GIGNWKDIKL AYPGVFEERS  840
TVDLKDKFRN LGKRHHESS
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G024054
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G024054_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0695860.0BT069586.1 Zea mays full-length cDNA clone ZM_BFb0174E09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D6GMG00.0A0A1D6GMG0_MAIZE; TRF-like 5
STRINGGRMZM2G024054_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.14e-11TRF-like 3