PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G024054_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 862aa    MW: 91973.2 Da    PI: 8.1843
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G024054_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.5e-08805854147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        r++W++ E e l+++v ++G g+Wk I    +   + R+  ++k++++++
  GRMZM2G024054_P01 805 RKKWSKIEIETLLEGVDKYGIGNWKDIKLAYPgvfEERSTVDLKDKFRNL 854
                        789********************************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-9803859IPR009057Homeodomain-like
SuperFamilySSF466893.12E-12803855IPR009057Homeodomain-like
PROSITE profilePS512939.363803859IPR017884SANT domain
SMARTSM007171.0E-7804857IPR001005SANT/Myb domain
PfamPF002492.4E-6805854IPR001005SANT/Myb domain
CDDcd116609.44E-19806856No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    Send to blast
MVDGPFVIFR LSDNAYLLVG EVLKKIVALA PFFCCHFINE LARSMQSLTL CAMKELRLYE  60
NSEKALLSST SANGTAILRV VQALSSLVST LQDRKDPEQP AEKDHSDAVS QISEINTALD  120
ALWLELSNCI SKIESSSEYA SNLTPASASA ATLTAGVAPP LPAGTQNRRT QGLLGRSGIR  180
RRGAAGFGIG DGAEVARANL PEVTGAAGFA GGAQRDLAAA TQSCASSPIY GDGAFASTVY  240
PSPKRWAADL PNHQELKSKF LSRTSARRPA NLMALVDAKA AGASTSTVAA APTVEHLLFL  300
VVLDGVETPI HEGTLYGSAG GTVTVTGPGQ LSADGLESVL VRGGGTGAGA VRFTLCADAA  360
AEGVGAACFE RCGAARVEGA REVSVSSCRA VEVERAGRVT LDRCRDARLR GGGALRATRC  420
RRADVESFGG VRLARCKAAR ADWCGTVEVE LCRAVDVRRC GAVTGERCRV VNAAGCGSVE  480
VARAVINMVE EEQPYPAAHP QQHCLVVSHI GVGITVGIVP ITMPPLPAAD DLLILEFIAS  540
NRRIPHAVFN SFIASQSPPS AFSRTSQRLR KALVLRALDA ALYTVGASCS SSLLLHKARK  600
VLADPDAAAC FPHQIPFTEN EENDEARAAV ADLKRLLDLE WANLPPSTLE LVAGDGSHQT  660
GAAADHTMRT KLRLFGESAK REILAKPVQV GSASHQSIRT QVADNASNAN KADGARRDEA  720
HPSNSNVNYE ADSDRESMVG HQNASVKGAE GQLSEKSVFT SKKRVLVERI PKWDSSDDDQ  780
PVRKRKLDPF ERKPYPSPTC AYKIRKKWSK IEIETLLEGV DKYGIGNWKD IKLAYPGVFE  840
ERSTVDLKDK FRNLGKRHHE SS
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G024054
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G024054_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9652400.0EU965240.1 Zea mays clone 284741 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D6GMG00.0A0A1D6GMG0_MAIZE; TRF-like 5
STRINGGRMZM2G024054_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1278533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.14e-11TRF-like 3