PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G023988_P04
Common Namesi945007d02
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 513aa    MW: 55510.9 Da    PI: 8.9224
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G023988_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.65.8e-07300321223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         C++Cgk F+r  nL+ H+r H
  GRMZM2G023988_P04 300 FCEICGKGFRRDANLRMHMRAH 321
                        6*******************99 PP
2zf-C2H211.90.00067387411123
                        EEETTTT..EEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCg..ksFsrksnLkrHirtH 23 
                        y C+ Cg  k+F    +L++H+r +
  GRMZM2G023988_P04 387 YACERCGgkKRFAVLADLRSHLRHC 411
                        89********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.41E-6296321No hitNo description
SMARTSM003550.0017299321IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.3E-6299321IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.676299321IPR007087Zinc finger, C2H2
PROSITE patternPS000280301321IPR007087Zinc finger, C2H2
SMARTSM0035579349382IPR015880Zinc finger, C2H2-like
SMARTSM0035517387410IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MPATVVALVV LSRSIVVADR IWLPPQMHPH RTLRLGRRAR WDQENSATFH RRRGEADPLR  60
LGRRARMTGT AEQRKWELKV FRVPTATVNF TSGEGMSAKG NNLSTAAPKR VVSCKSNFDT  120
TRCLVMDSTR SNQVAGRCNS TIASRAATVP PSLTMPRGEL ADAIVGGGGG GGADGDPRAA  180
LLRLSALGDR MAAVRGRICA SISGEARPLS YADIQSVSSE ISAAAQLVVL NAAELLASSV  240
PFPAPPPPPP SAAPSPAPVR EIPVVAASAQ EQPLEAAKDD GGYEVVELDA AELLAEHVHF  300
CEICGKGFRR DANLRMHMRA HGDRFKTLDA LSRPGHGQPK PPVGSNVRFS CPFAGCNRNR  360
THRRFRPLKS AVCARNHFRR SHCPKLYACE RCGGKKRFAV LADLRSHLRH CGEEAQWRCS  420
CGTTFSRKDK LFGHLALFEG HTPAVTKPNK DVVTGPTEST IDAMEEGGFE EGIPDREEDE  480
EGGYDPEFFK EWMDELRGGA GGSNWPGPAA DGH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.957580.0endosperm| ovary| sheath| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G023988
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G023988_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0430600.0BT043060.1 Zea mays full-length cDNA clone ZM_BFc0088P19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142275.20.0uncharacterized protein LOC100274444
TrEMBLA0A1D6HB460.0A0A1D6HB46_MAIZE; C2H2 and C2HC zinc fingers superfamily protein
STRINGGRMZM2G023988_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.33e-69C2H2 family protein