PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G023988_P03 | ||||||||
Common Name | si945007d02 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 513aa MW: 55510.9 Da PI: 8.9224 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.6 | 5.8e-07 | 300 | 321 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H GRMZM2G023988_P03 300 FCEICGKGFRRDANLRMHMRAH 321 6*******************99 PP | |||||||
2 | zf-C2H2 | 11.9 | 0.00067 | 387 | 411 | 1 | 23 |
EEETTTT..EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg..ksFsrksnLkrHirtH 23 y C+ Cg k+F +L++H+r + GRMZM2G023988_P03 387 YACERCGgkKRFAVLADLRSHLRHC 411 89********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.41E-6 | 296 | 321 | No hit | No description |
SMART | SM00355 | 0.0017 | 299 | 321 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 9.3E-6 | 299 | 321 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.676 | 299 | 321 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 301 | 321 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 79 | 349 | 382 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 17 | 387 | 410 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence Send to blast |
MPATVVALVV LSRSIVVADR IWLPPQMHPH RTLRLGRRAR WDQENSATFH RRRGEADPLR 60 LGRRARMTGT AEQRKWELKV FRVPTATVNF TSGEGMSAKG NNLSTAAPKR VVSCKSNFDT 120 TRCLVMDSTR SNQVAGRCNS TIASRAATVP PSLTMPRGEL ADAIVGGGGG GGADGDPRAA 180 LLRLSALGDR MAAVRGRICA SISGEARPLS YADIQSVSSE ISAAAQLVVL NAAELLASSV 240 PFPAPPPPPP SAAPSPAPVR EIPVVAASAQ EQPLEAAKDD GGYEVVELDA AELLAEHVHF 300 CEICGKGFRR DANLRMHMRA HGDRFKTLDA LSRPGHGQPK PPVGSNVRFS CPFAGCNRNR 360 THRRFRPLKS AVCARNHFRR SHCPKLYACE RCGGKKRFAV LADLRSHLRH CGEEAQWRCS 420 CGTTFSRKDK LFGHLALFEG HTPAVTKPNK DVVTGPTEST IDAMEEGGFE EGIPDREEDE 480 EGGYDPEFFK EWMDELRGGA GGSNWPGPAA DGH |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.95758 | 0.0 | endosperm| ovary| sheath| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G023988 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G023988_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT043060 | 0.0 | BT043060.1 Zea mays full-length cDNA clone ZM_BFc0088P19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001142275.2 | 0.0 | uncharacterized protein LOC100274444 | ||||
TrEMBL | A0A1D6HB46 | 0.0 | A0A1D6HB46_MAIZE; C2H2 and C2HC zinc fingers superfamily protein | ||||
STRING | GRMZM2G023988_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 3e-69 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G023988_P03 |