PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G023708_P01 | ||||||||
Common Name | EREB125, ZEAMMB73_799165 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 272aa MW: 28369.6 Da PI: 4.3477 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.7 | 1.4e-18 | 40 | 91 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y GVr+++ +gr++AeIrdp + + r++lg+f+taeeAa a+++a+++l+g+ GRMZM2G023708_P01 40 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 91 5799******.**********843...4*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.49E-28 | 40 | 99 | No hit | No description |
SMART | SM00380 | 3.1E-32 | 41 | 104 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.562 | 41 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.12E-21 | 41 | 98 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.3E-29 | 41 | 98 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.6E-11 | 41 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-8 | 42 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-8 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MNFSSYFFSS SSSSSDKKSS SSSSKRRQQA AQPQPDANTT RYLGVRRRPW GRYAAEIRDP 60 ATKERHWLGT FDTAEEAAVA YDRAARSLRG ARARTNFAYP DLPPGSSVTP YLSPDLTSGD 120 NATQLLQPFY ADPAASLAAA AAPAATNGAA GYGAAGDYAS YGYSAEDMSA LMEDLAIPDD 180 LTADYGAEDA GGGSVNMPSM YSGGGGANAS SGSGWCDASE FSAYGAPTTA ASHGVYFEEG 240 YVHSPLFSPM PAVDDASADG FQLGGSSSSY YY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-18 | 37 | 97 | 1 | 62 | ATERF1 |
3gcc_A | 4e-18 | 37 | 97 | 1 | 62 | ATERF1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G023708 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00509 | DAP | Transfer from AT5G13910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G023708_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728275 | 0.0 | KJ728275.1 Zea mays clone pUT6553 AP2-EREBP transcription factor (EREB125) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008663161.1 | 0.0 | ethylene-responsive transcription factor LEP | ||||
TrEMBL | K7TP09 | 0.0 | K7TP09_MAIZE; AP2-EREBP transcription factor | ||||
STRING | GRMZM2G023708_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 2e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G023708_P01 |
Entrez Gene | 103641601 |