PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G023557_P01 | ||||||||
Common Name | MYBR104, Zm.121677 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 129aa MW: 14623.5 Da PI: 9.6266 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.6 | 2.9e-08 | 2 | 47 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +W+ +E ++ +a + + + +W ++a+ +g gRt+ ++ +++ GRMZM2G023557_P01 2 SWSSDENHRFEQALADYDEDtpgRWQLVAQAVGGGRTADDVWRHYL 47 7*****************99*********************99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.576 | 1 | 54 | IPR017884 | SANT domain |
Pfam | PF00249 | 2.2E-6 | 1 | 47 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.25E-10 | 2 | 52 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.5E-4 | 3 | 54 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MSWSSDENHR FEQALADYDE DTPGRWQLVA QAVGGGRTAD DVWRHYLHLE GDIDDMGARE 60 RANRRRQQYR RNAQQHQHQH GASANANAYA SRNHISRRSN GGGASSSNTN NISSHRATNS 120 NDRAKRPQE |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G023557 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G023557_P01 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728310 | 0.0 | KJ728310.1 Zea mays clone pUT6590 MYB-related transcription factor (MYBR104) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001143360.1 | 6e-88 | uncharacterized protein LOC100275986 | ||||
TrEMBL | A0A060CZ32 | 4e-88 | A0A060CZ32_MAIZE; MYB-related transcription factor (Fragment) | ||||
STRING | GRMZM2G023557_P01 | 6e-89 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 3e-15 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G023557_P01 |