PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G023291_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HB-other | ||||||||
Protein Properties | Length: 174aa MW: 19595.1 Da PI: 10.2319 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.2 | 1.6e-19 | 30 | 87 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ GRMZM2G023291_P01 30 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 87 6789****************************************************97 PP | |||||||
2 | bZIP_1 | 21 | 7.4e-07 | 81 | 123 | 18 | 60 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 rr+R++ ++e +L++ +L+a Nk L +e+++l+k+v++l GRMZM2G023291_P01 81 RRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSRLV 123 9**************************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-19 | 15 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.435 | 24 | 88 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-15 | 26 | 92 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-18 | 28 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.01E-14 | 29 | 89 | No hit | No description |
Pfam | PF00046 | 4.3E-17 | 30 | 87 | IPR001356 | Homeobox domain |
CDD | cd14686 | 1.23E-4 | 81 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MSTALAVVGG GKDRPSPGGG GAPQVDTGKY VRYTPEQVEA LERVYSECPK PSSLRRQQLI 60 RECPILSNIE PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LTAMNKLLME ENDRLQKQVS 120 RLVYENGYMR QQLHNPSAAT TDTSCESVVT SGQHHQQQNP AAPRPQRDAN NPAG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.31413 | 1e-132 | ear| embryo| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G023291 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G023291_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK103284 | 0.0 | AK103284.1 Oryza sativa Japonica Group cDNA clone:J033124M18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001352464.1 | 1e-120 | uncharacterized protein LOC100192557 | ||||
Swissprot | Q6AST1 | 1e-109 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | A0A1D6KX67 | 1e-119 | A0A1D6KX67_MAIZE; Homeobox-leucine zipper protein ATHB-14 | ||||
TrEMBL | A0A1D6KX69 | 1e-119 | A0A1D6KX69_MAIZE; Homeobox-leucine zipper protein ATHB-14 | ||||
STRING | GRMZM2G023291_P01 | 1e-127 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP40913 | 2 | 2 | Representative plant | OGRP19155 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 6e-77 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G023291_P01 |
Entrez Gene | 103643700 |
Publications ? help Back to Top | |||
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