PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G022359_P01 | ||||||||
Common Name | ZEAMMB73_934258, Zm.18678 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | AP2 | ||||||||
Protein Properties | Length: 290aa MW: 31276.8 Da PI: 7.2727 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.5 | 8e-14 | 92 | 151 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++ k++g+++A+++d s+ g ++ k+++lg++ +e+Aaka++ a++k++g GRMZM2G022359_P01 92 SRFHGVTRLKWSGKYEAHLWDnTSQvEGrkRKgKHVYLGSYVDEEQAAKAHDLAALKYWG 151 789******************666696675336*************************98 PP | |||||||
2 | AP2 | 51.2 | 3.1e-16 | 196 | 249 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++k +g+W A+I e + k ++lg+f t+eeAa+a++ a+ +l+g GRMZM2G022359_P01 196 SSYRGVTRRK-DGKWQARIGRIGEsR--DtKDIYLGTFETEEEAAEAYDIAAIELRG 249 67*****999.9******99953323..36*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.77E-12 | 92 | 163 | No hit | No description |
SuperFamily | SSF54171 | 4.12E-13 | 92 | 162 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.4E-10 | 92 | 151 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-17 | 93 | 167 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-11 | 93 | 161 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.239 | 93 | 161 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-18 | 196 | 259 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.5E-11 | 196 | 249 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-28 | 197 | 263 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.1E-20 | 197 | 257 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.309 | 197 | 257 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-8 | 198 | 209 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-8 | 239 | 259 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MATVHPQSPA GPTHLPQEER HGDAPVPPAV SGEPAAAAEA GGEIAALDKQ LAVVGGGEER 60 RPAGAGAGAA SAGGGGKLVA EAMRKYAAPR SSRFHGVTRL KWSGKYEAHL WDNTSQVEGR 120 KRKGKHVYLG SYVDEEQAAK AHDLAALKYW GTGPNTKLNF NISDYEKEIE VMKTMSQDEF 180 VAYIRRQSSC FSRGTSSYRG VTRRKDGKWQ ARIGRIGESR DTKDIYLGTF ETEEEAAEAY 240 DIAAIELRGV HAVTNFDISN YCEDGLRKLE GPSEVAKLGS PSEVVKLAGQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.18678 | 1e-178 | cell culture| leaf| meristem| root| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G022359 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates in the basal embryo region that gives rise to hypocotyl, root, and root stem cells. Expressed in the root meristem throughout embryo development. {ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:20190735}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, flowers, and siliques. Also detected at low levels in leaves. In roots, specifically detected in the distal root meristem, including the QC. This tissue specificity is regulated by auxin gradient and depends on PIN proteins. {ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G022359_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU963200 | 0.0 | EU963200.1 Zea mays clone 258991 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001353948.1 | 0.0 | uncharacterized protein LOC100193301 | ||||
Swissprot | Q1PFE1 | 4e-70 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q5YGP7 | 2e-69 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | K7THI5 | 0.0 | K7THI5_MAIZE; AP2-like ethylene-responsive transcription factor AIL1 | ||||
STRING | GRMZM2G022359_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7864 | 35 | 48 | Representative plant | OGRP16063 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 2e-61 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G022359_P01 |