PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G022213_P01 | ||||||||
Common Name | LOC100383144 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 742aa MW: 80177.4 Da PI: 6.071 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.4 | 1.3e-05 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F r nL+ H r H GRMZM2G022213_P01 60 FVCEVCGKGFQRDQNLQLHRRGH 82 89******************988 PP | |||||||
2 | zf-C2H2 | 10.9 | 0.0014 | 139 | 160 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 Cp C k++ + +Lk H +t+ GRMZM2G022213_P01 139 ACPRCAKRYAVQADLKAHAKTC 160 6******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.37E-8 | 59 | 82 | No hit | No description |
SMART | SM00355 | 0.014 | 60 | 82 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 60 | 82 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.635 | 60 | 82 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 240 | 103 | 133 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.4E-4 | 126 | 159 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.37E-8 | 133 | 158 | No hit | No description |
SMART | SM00355 | 200 | 138 | 158 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 742 aa Download sequence Send to blast |
MPHPTDPEAG SEQKAEAPAV PLAAAAPAPV KKKRNLPGTP DPDAEVIALS PGTLLATNRF 60 VCEVCGKGFQ RDQNLQLHRR GHNLPWRLRQ RGPGAPPPRR RVYVCPEPAC VHHSPARALG 120 DLTGIKKHFC RKHGEKRWAC PRCAKRYAVQ ADLKAHAKTC GTREYRCDCG TLFTRRDSFV 180 THRAFCGALG EETGRVLAPP APPSPRPPDL EADENVADLE ADENVDKDND KEGEEENEDS 240 AVAEVEEPRR VEVVPEEPQR IPSPPPLPKE PPCRPSPPPL PQEQLSPPPS PKEPPCCHPS 300 PPPLPKEPQR LPFPPEQHAV VVALVPNVDE PEVVAVPSVT AELEDETDQD EDACFQEADQ 360 YKDSELEVSN LLDKDTPMLP CFLASPSEAI GTDGSGTTTC GAGGSVSNSI APSTTTNTFA 420 GLFASATTST TSHSTSLRDL IGVDPTFLCL AIGAPSLFPQ TSASNSGTFA LLPPAPHMSA 480 TALLQKATEA GATQSSSSFL KEFGLASSSS SSSSQPSSKQ VPQGRVGAAD TSAEPPWPYR 540 SNQQVDMERR QSHQRREMES CSQQWHPSST QQTEMERRHR NHHQEREMES SSQQWHRHHR 600 NDRQMGSESY RSNQQMQMES SSHQWLQHRS SEQMVGRRHH LERVESRGML LSGGGLGLGL 660 AYESGKSGLP DLMTGPSPSP SPLLGPKPAT LDFLGLGIGG TMVGSTGLPA LVAGGELDMG 720 SSAQVPAPWD DAQRKANGRT IL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 7e-29 | 134 | 196 | 3 | 65 | Zinc finger protein JACKDAW |
5b3h_F | 7e-29 | 134 | 196 | 3 | 65 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.64314 | 0.0 | endosperm| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G022213 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G022213_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066358 | 0.0 | BT066358.1 Zea mays full-length cDNA clone ZM_BFc0009B22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001169281.1 | 0.0 | uncharacterized protein LOC100383144 | ||||
TrEMBL | C0PDI9 | 0.0 | C0PDI9_MAIZE; Protein indeterminate-domain 11 | ||||
STRING | GRMZM2G022213_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11829 | 28 | 36 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 3e-89 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G022213_P01 |
Entrez Gene | 100383144 |