PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G022162_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NF-YC | ||||||||
Protein Properties | Length: 350aa MW: 37050.6 Da PI: 6.1186 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 122.3 | 2e-38 | 210 | 313 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 ql++ w + ie +tdfk+h++Pl+rikki++ad+dv i+ae+ v++ ace+filelt w hae nkrr l+ksdi aa++rtd+f GRMZM2G022162_P01 210 QLQMLWLELrreIEATTDFKKHNIPLSRIKKIMRADPDVCAITAEVLVVFPWACEMFILELTRHGWAHAEANKRRMLQKSDIVAAIARTDVF 301 789999764445******************************************************************************** PP NF-YC 90 dflvdivprdel 101 df+ d+v +d+ GRMZM2G022162_P01 302 DFFRDTVLHDDA 313 *******99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.84E-23 | 195 | 303 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 6.2E-26 | 225 | 295 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-13 | 233 | 295 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MAMAAVGVVV GGAVAFLLPQ RHDVTDFWSG AVRVSDEGEV GVMAIKMVVL VLVLRTHFAS 60 SSHHWPAAPE SMDPSQSGTP SLFPVMDIPV AYPPAAYPPC EVAVAAAAYP RLLYAPPDAA 120 AAQQAAAAQQ QQQLLGAPVV CPPAAYPPGE VAVAAAAYPP QLYAPPDAAA AQQATAAQQQ 180 LLGAPVRVAY APPDAAAVQQ AAAAQKHKHQ LQMLWLELRR EIEATTDFKK HNIPLSRIKK 240 IMRADPDVCA ITAEVLVVFP WACEMFILEL TRHGWAHAEA NKRRMLQKSD IVAAIARTDV 300 FDFFRDTVLH DDAKEGADAA PAAAAAAEKA HPAAGAPATD PLANYPMPQQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-34 | 220 | 308 | 5 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G022162 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G022162_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008670274.1 | 0.0 | nuclear transcription factor Y subunit C-6 | ||||
TrEMBL | A0A1D6ERZ0 | 0.0 | A0A1D6ERZ0_MAIZE; Nuclear transcription factor Y subunit C-9 | ||||
STRING | GRMZM2G022162_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP315 | 17 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 1e-37 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G022162_P01 |