PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G022162_P01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YC
Protein Properties Length: 350aa    MW: 37050.6 Da    PI: 6.1186
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G022162_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC122.32e-382103131101
              NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 
                        ql++ w +    ie +tdfk+h++Pl+rikki++ad+dv  i+ae+ v++  ace+filelt   w hae nkrr l+ksdi aa++rtd+f
  GRMZM2G022162_P01 210 QLQMLWLELrreIEATTDFKKHNIPLSRIKKIMRADPDVCAITAEVLVVFPWACEMFILELTRHGWAHAEANKRRMLQKSDIVAAIARTDVF 301
                        789999764445******************************************************************************** PP

              NF-YC  90 dflvdivprdel 101
                        df+ d+v +d+ 
  GRMZM2G022162_P01 302 DFFRDTVLHDDA 313
                        *******99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.84E-23195303IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.2E-26225295IPR009072Histone-fold
PfamPF008081.1E-13233295IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAMAAVGVVV GGAVAFLLPQ RHDVTDFWSG AVRVSDEGEV GVMAIKMVVL VLVLRTHFAS  60
SSHHWPAAPE SMDPSQSGTP SLFPVMDIPV AYPPAAYPPC EVAVAAAAYP RLLYAPPDAA  120
AAQQAAAAQQ QQQLLGAPVV CPPAAYPPGE VAVAAAAYPP QLYAPPDAAA AQQATAAQQQ  180
LLGAPVRVAY APPDAAAVQQ AAAAQKHKHQ LQMLWLELRR EIEATTDFKK HNIPLSRIKK  240
IMRADPDVCA ITAEVLVVFP WACEMFILEL TRHGWAHAEA NKRRMLQKSD IVAAIARTDV  300
FDFFRDTVLH DDAKEGADAA PAAAAAAEKA HPAAGAPATD PLANYPMPQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-34220308593NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G022162
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G022162_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670274.10.0nuclear transcription factor Y subunit C-6
TrEMBLA0A1D6ERZ00.0A0A1D6ERZ0_MAIZE; Nuclear transcription factor Y subunit C-9
STRINGGRMZM2G022162_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-37nuclear factor Y, subunit C2