PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G021834_P01
Common NameLOC100382535
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 335aa    MW: 37508.4 Da    PI: 10.096
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G021834_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32.1e-06312332426
                        ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        e Cr+f r G+C++ + C+F H+
  GRMZM2G021834_P01 312 EVCRDFKR-GECNR-PACRFLHP 332
                        89******.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.39499127IPR000571Zinc finger, CCCH-type
SMARTSM003560.12100126IPR000571Zinc finger, CCCH-type
PfamPF146080.012105125No hitNo description
SMARTSM003560.43134160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.732134161IPR000571Zinc finger, CCCH-type
PfamPF146082.9146159No hitNo description
Gene3DG3DSA:4.10.1000.102.9E-7175203IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.742177205IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-4177204IPR000571Zinc finger, CCCH-type
PfamPF146080.84182202No hitNo description
PROSITE profilePS5010310.559207233IPR000571Zinc finger, CCCH-type
SMARTSM003560.78207232IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.361276302IPR000571Zinc finger, CCCH-type
SMARTSM003560.0045276301IPR000571Zinc finger, CCCH-type
PfamPF146080.015282300No hitNo description
PROSITE profilePS5010312.455308334IPR000571Zinc finger, CCCH-type
SMARTSM003560.0058308333IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4311332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MASAEIPNSS PDATNPAAAA ATATATATGP DISSSPPLPP RKRRLSPSSS PTRSASRSRS  60
PRSRSPRGRR SRSRSRSRSR SRSRSPQYPP DGKRQRHNDL TVEACRDFLR DRCTRSDLEC  120
RYAHPHNSAS VDRDNKVTAC ADSLRNNCFR GMTCRYYHPP PQIQEQLLRS IGMEDPNVKT  180
QICRDFTRGK CSRSANECRF LHHSSVEDAA IVCQDFLRGQ CNRIACRYSH VVAHPVPPMS  240
HVPMPYPEML YMPPPPPPPL GVPMMGPPPS PFADNKNRVE VCRDFLKNMC NRESCRFLHP  300
GTHTAAASAN VEVCRDFKRG ECNRPACRFL HPYTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5u6h_A5e-141001671479Muscleblind-like protein 1
5u9b_A5e-141001671479Muscleblind-like protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17383RSRSRSRSRSR
27583RSRSRSRSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1370880.0endosperm| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G021834
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G021834_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0646860.0BT064686.1 Zea mays full-length cDNA clone ZM_BFb0030P05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001344781.10.0uncharacterized protein LOC100382535
RefseqXP_020403445.10.0uncharacterized protein LOC100382535 isoform X1
RefseqXP_020403446.10.0uncharacterized protein LOC100382535 isoform X1
RefseqXP_023157305.10.0uncharacterized protein LOC100382535 isoform X1
SwissprotQ0JD071e-128C3H28_ORYSJ; Zinc finger CCCH domain-containing protein 28
TrEMBLA0A096Q3U90.0A0A096Q3U9_MAIZE; Zinc finger CCCH domain-containing protein 28
STRINGGRMZM2G021834_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109041922
Representative plantOGRP1013666
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]