PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G021831_P01
Common NameLOC100274197
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 439aa    MW: 46481.2 Da    PI: 9.2077
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G021831_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix34.36.1e-11120199285
           trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                        W++  + aLi+a  e+  +l+rg+l+ p+W+ev++++ ++ g+    rs +qCk++++ l+k yk +++   +        +++fd+l
  GRMZM2G021831_P01 120 WSDGATSALIDAWGERFVALGRGSLRHPQWQEVADAVsSRDGYskgPRSDVQCKNRIDTLKK-YKVERAKPVS-------AWQFFDRL 199
                        *************************************87788833346779*******9976.6665554443.......47777777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-19118201No hitNo description
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0009066anatomyanther
PO:0020126anatomytassel inflorescence
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MPGSPSKHDR QPHAAGTAAP PKLTLPKPDR IRSPSPSPTL PSPNSLRSAG TQMDDDDDMS  60
PSSSPSPPSS ALPVDGPVTV AAAPPGATMV VALPIHRTAA SLYASAAAAG GGGGGREDAW  120
SDGATSALID AWGERFVALG RGSLRHPQWQ EVADAVSSRD GYSKGPRSDV QCKNRIDTLK  180
KYKVERAKPV SAWQFFDRLD FLLAPTYGNK PGSSGGGGGG HNSNSRGQMP SALRVGFPQR  240
SRTPLMPAAK RRAPSPEPSV SSDGFSPLPA LPPAVNGKRK RPDEGRPDGG SGDDRARGLQ  300
ELAHAIRRLG EAYERVEAAK LEQAAEMERQ RMDFAQELES QRVQFFLDAQ MELTQARNHV  360
SPASAARPAA GGSSRRTSVV TDTGGSSNHH SRYRISHGDM HRHAPRSHYQ PQYHGNNHAG  420
AGAGAGAASE EEDDYEEES
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G021831
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G021831_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0425180.0BT042518.1 Zea mays full-length cDNA clone ZM_BFb0313L06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142041.10.0uncharacterized protein LOC100274197
TrEMBLB4FZI00.0B4FZI0_MAIZE; Trihelix transcription factor
STRINGGRMZM2G021831_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.17e-42sequence-specific DNA binding transcription factors