PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G021790_P01
Common NameEREB146, ZEAMMB73_164135
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 281aa    MW: 30132.8 Da    PI: 7.5861
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G021790_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.3e-19119170256
                AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr+++ +g+++AeIrd  +   k +r++lg+f tae+Aa a+++a+++++g+
  GRMZM2G021790_P01 119 SYRGVRRRP-WGKFAAEIRDtRR---KGARVWLGTFATAEDAALAYDKAALRMRGP 170
                        69*******.**********332...34**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.327119177IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22119179IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-31119177IPR001471AP2/ERF domain
PfamPF008473.5E-14119169IPR001471AP2/ERF domain
SMARTSM003802.4E-36119183IPR001471AP2/ERF domain
CDDcd000182.24E-26120177No hitNo description
PRINTSPR003672.0E-10120131IPR001471AP2/ERF domain
PRINTSPR003672.0E-10143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006505anatomycentral spike of ear inflorescence
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAIGAADDGS HQQLADQAAN ILENVWAAII GSGTPAAPST TEMRPPEAIL ERLPSLGRWI  60
SMGAEEWDEL LLNGAALASD AAASGELLIA ASPAASQEAD RQHGHRASCS SKAAAACKSY  120
RGVRRRPWGK FAAEIRDTRR KGARVWLGTF ATAEDAALAY DKAALRMRGP RAHLNFPLDV  180
VQRELAAAAA RDDGCAETAR VLRRKRRVAN HDDSAVGTRS HHRSVMPATG RDPTPTMVSF  240
ACARKDQGTP PAMMQGRSTS DPGAVIEFED IGGEYWDYLF T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-28115180166ATERF1
3gcc_A3e-28115180166ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G021790
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G021790_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276630.0KJ727663.1 Zea mays clone pUT5590 AP2-EREBP transcription factor (EREB146) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657508.10.0ethylene-responsive transcription factor ERF094
TrEMBLK7V1E80.0K7V1E8_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G021790_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116162736
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.16e-20ethylene response factor 1