PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G021777_P02
Common NameZm.27242
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family DBB
Protein Properties Length: 300aa    MW: 30470.8 Da    PI: 4.3004
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G021777_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.79.8e-082865438
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                       r C+ +  ++++l+C+ ++ +lC+ C    H g    H 
  GRMZM2G021777_P02 28 RPCDACAAEPARLHCRADGAFLCPGCDARAH-GagsrHA 65
                       68**************************999.4466675 PP

2zf-B_box23.21.5e-0767111341
           zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                         + C+ +e+ ++   C+ +   lC+ C   +H+       H++ p
  GRMZM2G021777_P02  67 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 111
                        679*****************************6688888898877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.2E-52569IPR000315B-box-type zinc finger
PROSITE profilePS501199.6842569IPR000315B-box-type zinc finger
CDDcd000217.50E-72869No hitNo description
PfamPF006437.1E-62865IPR000315B-box-type zinc finger
PROSITE profilePS5011910.42465112IPR000315B-box-type zinc finger
PfamPF006436.8E-667112IPR000315B-box-type zinc finger
SMARTSM003364.6E-970112IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDTAAELELG LELEQKPAAG YWSVVGARPC DACAAEPARL HCRADGAFLC PGCDARAHGA  60
GSRHARVWLC EVCEHAPAAV TCRADAAALC AACDADIHSA NPLARRHERL PVAPLFGALA  120
DAPQPFPSPA FAAAAGAEAP AQGEAVAEDY GSSEAEAASW LLPEPDNSHE DSAADTFFAE  180
SDAYLGADLD FARCMDGVKA IGVPVAPPEL DIGAGSFCYP EHSMNHIVSR TFNSISGILL  240
TDRSQRLDDG DNVDAFQSLL IAVVVILGGG GGTGRAGGRP AGGGGGEQRG GAGGAADAVP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276284GGRPAGGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.272420.0endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G021777
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G021777_P02
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9562390.0EU956239.1 Zea mays clone 1559496 CONSTANS-like protein CO5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147679.21e-161Col3 transcription factor
SwissprotQ9FHH81e-37COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A1D6HCU01e-160A0A1D6HCU0_MAIZE; CONSTANS-like protein CO5
STRINGGRMZM2G021777_P011e-160(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.21e-17CONSTANS-like 3
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]