PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G021777_P02 | ||||||||
Common Name | Zm.27242 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | DBB | ||||||||
Protein Properties | Length: 300aa MW: 30470.8 Da PI: 4.3004 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.7 | 9.8e-08 | 28 | 65 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 r C+ + ++++l+C+ ++ +lC+ C H g H GRMZM2G021777_P02 28 RPCDACAAEPARLHCRADGAFLCPGCDARAH-GagsrHA 65 68**************************999.4466675 PP | |||||||
2 | zf-B_box | 23.2 | 1.5e-07 | 67 | 111 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + C+ +e+ ++ C+ + lC+ C +H+ H++ p GRMZM2G021777_P02 67 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 111 679*****************************6688888898877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 5.2E-5 | 25 | 69 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.684 | 25 | 69 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.50E-7 | 28 | 69 | No hit | No description |
Pfam | PF00643 | 7.1E-6 | 28 | 65 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.424 | 65 | 112 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.8E-6 | 67 | 112 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.6E-9 | 70 | 112 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MDTAAELELG LELEQKPAAG YWSVVGARPC DACAAEPARL HCRADGAFLC PGCDARAHGA 60 GSRHARVWLC EVCEHAPAAV TCRADAAALC AACDADIHSA NPLARRHERL PVAPLFGALA 120 DAPQPFPSPA FAAAAGAEAP AQGEAVAEDY GSSEAEAASW LLPEPDNSHE DSAADTFFAE 180 SDAYLGADLD FARCMDGVKA IGVPVAPPEL DIGAGSFCYP EHSMNHIVSR TFNSISGILL 240 TDRSQRLDDG DNVDAFQSLL IAVVVILGGG GGTGRAGGRP AGGGGGEQRG GAGGAADAVP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 276 | 284 | GGRPAGGGG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.27242 | 0.0 | endosperm| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G021777 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G021777_P02 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956239 | 0.0 | EU956239.1 Zea mays clone 1559496 CONSTANS-like protein CO5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147679.2 | 1e-161 | Col3 transcription factor | ||||
Swissprot | Q9FHH8 | 1e-37 | COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | A0A1D6HCU0 | 1e-160 | A0A1D6HCU0_MAIZE; CONSTANS-like protein CO5 | ||||
STRING | GRMZM2G021777_P01 | 1e-160 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24790.2 | 1e-17 | CONSTANS-like 3 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G021777_P02 |
Publications ? help Back to Top | |||
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