PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G021587_P01
Common NameLOC103647648, Zm.372
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 554aa    MW: 58743.2 Da    PI: 8.4967
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G021587_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-055476123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ C+k F r  nL+ H+r H
  GRMZM2G021587_P01 54 FVCEVCSKGFQRDQNLQLHLRGH 76
                       89*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-55376IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.36E-65376No hitNo description
PROSITE profilePS5015710.7835476IPR007087Zinc finger, C2H2
PfamPF128740.00155476No hitNo description
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.0E-4118151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.36E-6125150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MRPRGTSLQQ SSASALGDGD AALPKKKRNR PGNPKPDAEV IALSPRTLLA TNRFVCEVCS  60
KGFQRDQNLQ LHLRGHNMPW KLKQKDPKDA RRRVYLCPEP TCVHHSPSRA LGDLTGIKKH  120
YCRKHGEKKF RCDRCSKRYA VESDWKAHGK TCGAREYRCH CNALFSRKDN FITHRATCDA  180
AVRGTAQKPP LVAGLYVGSG SDDRLGLSDA AAQMHGFADQ GQSSSAAEAS QFDHVMPSYS  240
GSSMFRSQAS DFSLSFFLGG GTPLIEQDLS DNGGDLSEGS QGPLLHGKAP LHGVMTHLPE  300
QQYQPNSGNA NVNLLDIGFF SGNSGGTSGS QGPLLHGKEP FHSHDLTQLP EQQHQPGSSN  360
ARVNLPNLGV FSGNSGGWPG SSHQDARLVI QDQLNGGSSS NTEHGNGMAS IGSHFGGGFV  420
PSLHNSSPSA GLSATALLMK AAQMGSTTSS TTHNPNGPSA LLRAAGFAGT ASVRETSSRA  480
AEEEKSHEAY FHDLIMNSLP LTGGGTGGLS GLAGVDDGNV STRDFLGVGR DDATAPQGLH  540
GMGAPNPTQM KWYM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-24126191368Zinc finger protein JACKDAW
5b3h_F1e-24126191368Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G021587
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G021587_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0185240.0BT018524.1 Zea mays clone EL01N0432F10.d mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670373.10.0protein indeterminate-domain 6, chloroplastic
TrEMBLA0A1D6EUS60.0A0A1D6EUS6_MAIZE; Protein indeterminate-domain 5 chloroplastic
STRINGGRMZM2G021587_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-87indeterminate(ID)-domain 4