PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G021573_P01 | ||||||||
Common Name | LOC100384380, ZEAMMB73_355599 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | AP2 | ||||||||
Protein Properties | Length: 649aa MW: 70083.5 Da PI: 7.2245 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.4 | 5.7e-11 | 283 | 340 | 1 | 55 |
AP2 1 sgykGV.rwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV ++++++gr++A+++d + +g rk + g ++t+++Aa+a++ a++k++g GRMZM2G021573_P01 283 SRYRGVtSRHRWTGRYEAHLWDnSCRkDGqTRKGRQ-GGYDTEDKAARAYDLAALKYWG 340 79*****9**************54445554335555.77***99*************98 PP | |||||||
2 | AP2 | 46.5 | 9.4e-15 | 383 | 434 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW ++I + +k +lg+f t eeAa+a++ a+ k++g GRMZM2G021573_P01 383 SIYRGVTRHHQQGRWQSRIGRVAG---NKDLYLGTFTTQEEAAEAYDIAAIKFRG 434 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.29E-12 | 283 | 350 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.4E-8 | 283 | 340 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.74E-15 | 283 | 349 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.1E-12 | 284 | 349 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-18 | 284 | 354 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.728 | 284 | 348 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.59E-23 | 383 | 444 | No hit | No description |
Pfam | PF00847 | 1.2E-8 | 383 | 434 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.89E-17 | 383 | 443 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-17 | 384 | 442 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-30 | 384 | 448 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.597 | 384 | 442 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 649 aa Download sequence Send to blast |
MANGSNWLGF SLSPHTAMEV PSVSEPASTH HAPPPPSSST TISSSSTNNT ISSNFLFSPM 60 ASPYPGYYCV GGAYGDGTSA AGVYYSHLPA MPNKSDDGTL CNMEGMVPSS PPKLEDFLGG 120 GNGGGQETAT YYSHQQQGQE EGASRDYRQY HYQHQQLVPY NFQPLTEAEM LQEGAAPMEE 180 AMAAAKNFLL ASYGACYSNE ETRPLSLSMM SPGTQLSSCV SAAPQQQHQM AATVATAATA 240 AAALGRSNGD GEQCVGRKRS TGKGGHKQTV HRKSIDTFGQ RTSRYRGVTS RHRWTGRYEA 300 HLWDNSCRKD GQTRKGRQGG YDTEDKAARA YDLAALKYWG PATHVNFPVE NYRDELEEMK 360 GMTRQEFVAH LRRRSSGFSR GASIYRGVTR HHQQGRWQSR IGRVAGNKDL YLGTFTTQEE 420 AAEAYDIAAI KFRGLNAVTN FDIARYDVDK IMESSTLLAV EEARKVKAVE AASSAPMTHT 480 HSGGKEQLNA TTAEETSSAG WRMVLHGSPH QLEAARCPEA ADLQSAIMNN DSHPRPSLHG 540 IAGLDIECAV HDHHDHLDVP AGSRTTAAGS INFSNSSSQV TSLGNSREGS PERLGLAMMY 600 GKQPSSAVSL AATMSPWTPV AAQTVAHVLK QQPNVVVSHR PVFAAWADA |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G021573 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G021573_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069979 | 0.0 | BT069979.1 Zea mays full-length cDNA clone ZM_BFb0363I04 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001349283.1 | 0.0 | uncharacterized protein LOC100384380 | ||||
Swissprot | Q84Z02 | 1e-127 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A3L6DD80 | 0.0 | A0A3L6DD80_MAIZE; AP2-like ethylene-responsive transcription factor ANT | ||||
STRING | GRMZM2G021573_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-104 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G021573_P01 |
Publications ? help Back to Top | |||
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