PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G021369_P02 | ||||||||
Common Name | LOC100216705 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 195aa MW: 20486.3 Da PI: 12.2751 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.6e-17 | 31 | 80 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr ++ +g+Wv+e+r ps+ ++r++lg++ tae Aa+a++aa ++l+g GRMZM2G021369_P02 31 QYKGVRMRS-WGSWVSEVRAPSQ---KTRIWLGSYSTAEAAARAYDAALLCLKG 80 6*****998.*******999854...6************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.9E-28 | 30 | 89 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-31 | 31 | 95 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.654 | 31 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-17 | 31 | 90 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.61E-14 | 31 | 91 | No hit | No description |
Pfam | PF00847 | 1.2E-10 | 31 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-9 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-9 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MVKGAHFQDA AVDGGAGGNA EAAMQGGAKR QYKGVRMRSW GSWVSEVRAP SQKTRIWLGS 60 YSTAEAAARA YDAALLCLKG SAAADLNFPV HLPFHVPAAA AMSPKSIQRV AAAAAAASGG 120 ATCSPPAPLL RAATATRRRR LALAPRRPAG TLACATARRT TTTWTWTWRA TPTRTSPRSR 180 TSRPSSSRLS AWSTP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.32214 | 0.0 | cell lignification| glume |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G021369 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G021369_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT037212 | 0.0 | BT037212.1 Zea mays full-length cDNA clone ZM_BFb0159C05 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020393375.1 | 4e-84 | ethylene-responsive transcription factor ERF013 | ||||
TrEMBL | B4FJC4 | 1e-132 | B4FJC4_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G021369_P01 | 1e-83 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G44830.1 | 1e-28 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G021369_P02 |