PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G021276_P02 | ||||||||
Common Name | bHLH16, TIDP2747, ZEAMMB73_833689 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 365aa MW: 39741 Da PI: 6.5121 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.3 | 5.8e-08 | 173 | 215 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + E++RR r+ +++ L l+P+ +K + a++ A+eYI++L GRMZM2G021276_P02 173 KKEKQRRLRLTEKYTALMHLIPNV-----TKTDRATVISDAIEYIQEL 215 57*********************8.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.325 | 166 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-7 | 172 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-5 | 173 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.43E-7 | 175 | 215 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-9 | 175 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.97E-11 | 175 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MYHPQCELLT MAHETPDLDA GQPHLTVSGV ASIPAELSFH LLHSLDAAAA VNPVTAPPQS 60 TIDYFLGGAD PHQQAMQYEP LPPAAGGHHQ YTMDMFRDYC DGHYPTAEPY IRGTMTGALV 120 FGATDDDDSA AAYMPGGHFE TSPPPPRATG RGRKRGRALG GGFHAVLANG VEKKEKQRRL 180 RLTEKYTALM HLIPNVTKTD RATVISDAIE YIQELGRTVE ELTLLVEKKR RRRELQGDVV 240 DAAPAAVVAA AGEAESSEGE VAPPPPAVPR QPIRSTYIQR RSKDTSVDVR IVEEDVNIKL 300 TKRRRDGCLA AASRALDDLR LDLVHLSGGK IGDCQIYMFN TKIHKGSSVF ASAVAGRLME 360 VVDEY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 151 | 157 | GRKRGRA |
2 | 227 | 232 | KKRRRR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G021276 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In anthers, expressed from the meiosis stage to mitosis, with maximum levels at stages 7 and 8, when meiosis initiates, and when endothecium and the middle layer become condensed, respectively. | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in anthers; strong expression in the middle layer and tapetum, and weak expression in the endothecium. {ECO:0000269|PubMed:24755456}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G021276_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT064392 | 0.0 | BT064392.1 Zea mays full-length cDNA clone ZM_BFc0164O20 mRNA, complete cds. | |||
GenBank | BT064573 | 0.0 | BT064573.1 Zea mays full-length cDNA clone ZM_BFc0184C05 mRNA, complete cds. | |||
GenBank | BT068906 | 0.0 | BT068906.1 Zea mays full-length cDNA clone ZM_BFc0190J24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001149921.1 | 0.0 | uncharacterized protein LOC100283549 | ||||
Refseq | XP_008655013.1 | 0.0 | uncharacterized protein LOC100283549 isoform X1 | ||||
Refseq | XP_008655015.1 | 0.0 | uncharacterized protein LOC100283549 isoform X1 | ||||
Swissprot | Q5JNS0 | 1e-148 | TIP2_ORYSJ; Transcription factor TIP2 | ||||
TrEMBL | A0A3L6DSW2 | 0.0 | A0A3L6DSW2_MAIZE; Transcription factor TIP2 | ||||
TrEMBL | B6TJC2 | 0.0 | B6TJC2_MAIZE; BHLH transcription factor | ||||
STRING | GRMZM2G021276_P05 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1904 | 37 | 96 | Representative plant | OGRP2659 | 14 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06170.2 | 2e-22 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G021276_P02 |
Entrez Gene | 100283549 |
Publications ? help Back to Top | |||
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