PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G021095_P01
Common NameLOC100280810
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 235aa    MW: 25087.4 Da    PI: 7.2827
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G021095_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.47.8e-41611601100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrr+Ca++Cvlapyfp ++p+kf  +h++FGasn++kll++lpe+ r da+ss+vyeAear+rdPvyG++g + +lq+q ++lk+
  GRMZM2G021095_P01  61 PCAACKILRRRCADGCVLAPYFPPTEPAKFTTAHRVFGASNIIKLLQDLPESSRADAVSSMVYEAEARLRDPVYGCAGAVCRLQKQANELKV 152
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        +la++++ 
  GRMZM2G021095_P01 153 QLARAQAD 160
                        ***99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.46360161IPR004883Lateral organ boundaries, LOB
PfamPF031955.5E-4161158IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDDYGNASAG TAAPQPQQYY CRSVSPPSRV SSSCSPPPPP PPPAVLQVVG NVPPPTVVLS  60
PCAACKILRR RCADGCVLAP YFPPTEPAKF TTAHRVFGAS NIIKLLQDLP ESSRADAVSS  120
MVYEAEARLR DPVYGCAGAV CRLQKQANEL KVQLARAQAD LLNAQAKHAN LLALFCVEMA  180
NRRGNQQHPS PLTTMMDGGG GGGFGAAAYY QQTTLYDSDL DSATTWPDHE AQLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-416016310113LOB family transfactor Ramosa2.1
5ly0_B3e-416016310113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G021095
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G021095_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9539370.0EU953937.1 Zea mays clone 1449845 LOB domain protein 11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465424.11e-117LOB domain-containing protein 1
SwissprotQ9LQR07e-62LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A1D6JZ191e-172A0A1D6JZ19_MAIZE; LOB domain protein 11
TrEMBLA0A317YBB21e-172A0A317YBB2_MAIZE; LOB domain-containing protein 1
STRINGGRMZM2G021095_P011e-173(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.17e-64LOB domain-containing protein 1