PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G020805_P01 | ||||||||
Common Name | LOC100383331 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 440aa MW: 46223.4 Da PI: 9.9507 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127.6 | 1.3e-39 | 62 | 197 | 2 | 128 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec.......e 74 g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LG+d++sk+ieWL+++a +ai++l+++ + GRMZM2G020805_P01 62 SGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAIEWLIRAAAEAIDKLPSLdaaagfpahpasA------KdhappvgD 147 689*************************************************************8888664432221......222222232 PP TCP 75 aesssssasnsssgkaaksaakskksqksaasalnlak.esrakarararertre 128 ++++ +++++++ + + +s+ s++s+ s+l+l++ esr kar+rarer++ GRMZM2G020805_P01 148 DDDH-----HHQQQQQLTRSGCSSTSETSKGSVLSLSRsESRVKARERARERNTV 197 2222.....23333667777799999999999*******************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.3E-40 | 63 | 197 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.972 | 64 | 122 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.992 | 181 | 201 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MEVEAMGGAG GKRGRAKGAG AGAGAEPEPK RRAMAVAVQP PAAAPWAQQH PASRIYRVSR 60 ASGGKDRHSK VYTAKGIRDR RVRLSVATAI QFYDLQDRLG YDQPSKAIEW LIRAAAEAID 120 KLPSLDAAAG FPAHPASAKD HAPPVGDDDD HHHQQQQQLT RSGCSSTSET SKGSVLSLSR 180 SESRVKARER ARERNTVARD KDPAANDTTA TTSAQAASFT ELLTGMAAAS AAPAQHKHQL 240 RQSSVSWQPT IVSATTDYIG FAQPRKGGGH AMAHAFASPA PHLGNIASIA MAPAQHFGLA 300 SGAVTVASGG GGEPHAEMTH FSFLQDHFMP VHAAPAPAPA SAPAGEYNLD FSMSSGLMGV 360 NTRGALQSNS QPHISGHHHQ QQQLQRLSTP LDAPNIPFLY SSAAAAAAAV TTPTTADGQF 420 AAFQLWNGFQ HADMKEKGKH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-27 | 69 | 123 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 7e-27 | 69 | 123 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.124114 | 0.0 | endosperm |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G020805 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G020805_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066930 | 0.0 | BT066930.1 Zea mays full-length cDNA clone ZM_BFb0110J16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001336965.1 | 0.0 | uncharacterized protein LOC100383331 | ||||
TrEMBL | A0A1D6F9D0 | 0.0 | A0A1D6F9D0_MAIZE; Transcription factor TCP2 | ||||
STRING | GRMZM2G020805_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 4e-38 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G020805_P01 |