PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G020772_P01
Common NameLOC100381953
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 304aa    MW: 33419.5 Da    PI: 9.988
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G020772_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.4e-083276447
                       S-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  4 WTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47
                       WT+ E +++ +a + l     +W+++ar ++ gRt  +++s++ ++
  GRMZM2G020772_P01 32 WTAAENKQFERALAGLDLCrpDWEKVARAIP-GRTVREVVSHFKSL 76
                       ****************99999**********.**********9875 PP
2Myb_DNA-binding461.2e-14143187347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+ l++ + k++G+g+W+ I+r   ++Rt+ q+ s+ qky
  GRMZM2G020772_P01 143 PWTEEEHRLFLLGLKKYGKGDWRNISRNYVQTRTPTQVASHAQKY 187
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.762781IPR017884SANT domain
SMARTSM007170.0162879IPR001005SANT/Myb domain
CDDcd001671.24E-63276No hitNo description
SuperFamilySSF466893.01E-83284IPR009057Homeodomain-like
PfamPF002491.9E-53276IPR001005SANT/Myb domain
PROSITE profilePS5129418.711136192IPR017930Myb domain
SuperFamilySSF466898.28E-18138192IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17139190IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.1E-12140186IPR009057Homeodomain-like
SMARTSM007176.3E-13140190IPR001005SANT/Myb domain
CDDcd001675.37E-12143188No hitNo description
PfamPF002493.5E-12143187IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MMRETYMDVL PPVDHIAASR SGGWFPGAAR LWTAAENKQF ERALAGLDLC RPDWEKVARA  60
IPGRTVREVV SHFKSLQVDV QQIESGLVPM PVYGAGAGSF TLQWDGCYGP ADSRHNGYRF  120
GSGGCGRRHH GRTPEQDRKK GVPWTEEEHR LFLLGLKKYG KGDWRNISRN YVQTRTPTQV  180
ASHAQKYFIR LNSGGKDKRR SSIHDITTVN LTDDERAPSP SRSSLITTTS QPNAPAPAAA  240
VIGGPFSSAA AAEAKQHQHG AGNLPPNRTS VVPAVYRMDD SQDHGLQCGP LRHQLVASHH  300
SVLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-142799679RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.330160.0ovary| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G020772
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G020772_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0627220.0BT062722.1 Zea mays full-length cDNA clone ZM_BFb0338C17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168197.10.0uncharacterized LOC100381953
RefseqXP_008673107.10.0putative MYB DNA-binding domain superfamily protein isoform X1
SwissprotQ8S9H72e-73DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A3L6FG350.0A0A3L6FG35_MAIZE; Transcription factor DIVARICATA
TrEMBLC0P3530.0C0P353_MAIZE; Duplicated homeodomain-like superfamily protein
TrEMBLK4JRL70.0K4JRL7_MAIZE; MYB-type transcription factor (Fragment)
STRINGGRMZM2G020772_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78863348
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-63MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]