PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G020054_P01 | ||||||||
Common Name | EREB54, ZEAMMB73_775691 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 186aa MW: 19908.3 Da PI: 7.9248 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 19 | 69 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 + +GVr ++ +gr++AeIrd + r +r++lg+f+t+e+Aa+a++aa+++l+g+ GRMZM2G020054_P01 19 RLRGVRKRP-WGRYAAEIRDpV-----RkARVWLGTFDTPEQAARAYDAAARRLRGP 69 679******.**********44.....55**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.74E-17 | 18 | 76 | No hit | No description |
Pfam | PF00847 | 3.3E-14 | 18 | 68 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-21 | 19 | 77 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.354 | 19 | 76 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-31 | 19 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-10 | 20 | 31 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.4E-30 | 21 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-10 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MAPKRSSEER AAAEQEQPRL RGVRKRPWGR YAAEIRDPVR KARVWLGTFD TPEQAARAYD 60 AAARRLRGPR ATTNYPGDVV REAPCTAPAL AASASGSTES SSSSSSRDDG HPPPPLPTAP 120 SSLGLGLGLF PATVATQPCL FLDPAPVERE EGERERSCCS RSPPSVLAGL GFDFDLNLPP 180 PAEMVM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-20 | 16 | 76 | 11 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.140207 | 0.0 | ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G020054 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G020054_P01 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728265 | 0.0 | KJ728265.1 Zea mays clone pUT6542 AP2-EREBP transcription factor (EREB54) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020401288.1 | 1e-129 | ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | K7TL41 | 1e-128 | K7TL41_MAIZE; AP2-EREBP transcription factor | ||||
STRING | GRMZM2G020054_P01 | 1e-129 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11853 | 25 | 37 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 2e-18 | ERF domain protein 11 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G020054_P01 |