PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G020016_P01 | ||||||||
Common Name | LOC103630552, Zm.1164 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 21726.6 Da PI: 10.9213 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 54 | 104 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrd + r +r++lg+++t+ +Aa a+++a+ +l+g+ GRMZM2G020016_P01 54 HYRGVRKRP-WGRYAAEIRDpW-----RkTRVWLGTYDTPVDAAMAYDRAAVALRGA 104 6********.**********88.....45*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.38E-27 | 53 | 112 | No hit | No description |
PROSITE profile | PS51032 | 21.601 | 54 | 111 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-32 | 54 | 117 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-11 | 54 | 103 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-29 | 54 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.89E-21 | 54 | 111 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.9E-9 | 55 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-9 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MQQMEWDTRG GGGGGGGGGG GHGGAVGDGG PRGGGLTVGG VAVGVADQQR VEAHYRGVRK 60 RPWGRYAAEI RDPWRKTRVW LGTYDTPVDA AMAYDRAAVA LRGAKARTNF AAGRGSRATP 120 PVQARPLPYP ALAPGHFGVL DGARSSPWHV VYLPPPRLHH AVAPPMPLVA VAGDAASSLP 180 STALELRTGP KALPFDLNEP PSLLLGSRSP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-20 | 54 | 110 | 5 | 62 | ATERF1 |
3gcc_A | 6e-20 | 54 | 110 | 5 | 62 | ATERF1 |
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Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G020016 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G020016_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040420 | 0.0 | BT040420.1 Zea mays full-length cDNA clone ZM_BFc0090F19 mRNA, complete cds. | |||
GenBank | EU973503 | 0.0 | EU973503.1 Zea mays clone 399837 mRNA sequence. | |||
GenBank | KJ726942 | 0.0 | KJ726942.1 Zea mays clone pUT3488 AP2-EREBP transcription factor (EREB93) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008649825.1 | 1e-145 | ethylene-responsive transcription factor 12 | ||||
TrEMBL | A0A1D6M7D0 | 1e-143 | A0A1D6M7D0_MAIZE; Putative AP2/EREBP transcription factor superfamily protein | ||||
STRING | GRMZM2G020016_P01 | 1e-144 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 6e-24 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G020016_P01 |
Entrez Gene | 103630552 |