PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G019956_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 348aa    MW: 38871.2 Da    PI: 8.6402
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G019956_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.32e-11711531697
                        EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE CS
                 B3  16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvf 97 
                        l + k++a++h  +  +s+ +tl +  ++++W  ++  r  s+ y+ t+ W +Fv++n+++egD++++  + ++ ++++++v v+
  GRMZM2G019956_P01  71 LGITKEYATAHFPD--RSTHITLGTpGKSKKWHPRFYRRDVSRNYMVTGEWLDFVRDNHVQEGDICLLLPTrDDvMRRTFTVYVL 153
                        77999******744..7889***995566*******55666666***********************995534467777777765 PP
2B346.66e-152873454199
                        TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                 B3  41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                          g++W+ k+ + +++++ +l +GW +F++ ngL++gD+++F+l+++ s+ ++ v+++r+
  GRMZM2G019956_P01 287 CAGKTWKAKMMFHNGRRW-FLNGGWPNFARGNGLRVGDICLFQLEKNeSTLTMAVHIIRR 345
                        479*******98888877.6999**********************999*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.3E-1747153IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.11E-1549145IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.008355156IPR003340B3 DNA binding domain
CDDcd100173.46E-1355153No hitNo description
PROSITE profilePS5086310.0856156IPR003340B3 DNA binding domain
PfamPF023621.6E-971152IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-20240345IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.23E-18241345IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-17246344No hitNo description
SMARTSM010199.1E-6248346IPR003340B3 DNA binding domain
PfamPF023624.3E-13282345IPR003340B3 DNA binding domain
PROSITE profilePS5086312.365289346IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MATVSSSSDE ESGEDIVSEN VVLGYVLAYR CYLSKAQKKR VMGLVQEIQP QFTAFVSIMR  60
RGNVQPPGPN LGITKEYATA HFPDRSTHIT LGTPGKSKKW HPRFYRRDVS RNYMVTGEWL  120
DFVRDNHVQE GDICLLLPTR DDVMRRTFTV YVLHETSHYS AGGPGASSVA KMASEIRTEE  180
EPAAGESVSS GTSGAQEFPH GSAVESGGDS GDSFEPPYFV PCKSPLSESQ KRIVEERVRA  240
IRSEIPICVA VMKNNNVGFA QRWMLELGSR YGSVYLPTKG QTILLCCAGK TWKAKMMFHN  300
GRRWFLNGGW PNFARGNGLR VGDICLFQLE KNESTLTMAV HIIRREQF
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G019956
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G019956_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644657.10.0B3 domain-containing protein Os03g0619600
TrEMBLA0A1D6GLQ00.0A0A1D6GLQ0_MAIZE; B3 domain-containing protein
STRINGGRMZM2G019956_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Representative plantOGRP1536734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.18e-08B3 family protein