PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G019907_P02 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 329aa MW: 36526.2 Da PI: 8.4666 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.5 | 1.9e-10 | 46 | 87 | 5 | 46 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k rr+++NReAAr+sR+RKka+i++Le +L++ ++L GRMZM2G019907_P02 46 KTLRRLAQNREAARKSRLRKKAYIQNLESSRLKLTQLEQELH 87 7889************************97777777666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.1E-8 | 35 | 89 | No hit | No description |
SMART | SM00338 | 1.5E-7 | 42 | 105 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.186 | 44 | 88 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.38E-8 | 46 | 90 | No hit | No description |
Pfam | PF00170 | 1.3E-7 | 46 | 87 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 49 | 64 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 3.0E-31 | 128 | 203 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MAGSPMTDTS TDPDTDERNQ MFEQGLVAVP TASDSSDKSR DKLDQKTLRR LAQNREAARK 60 SRLRKKAYIQ NLESSRLKLT QLEQELHQTR QQGIFISTSG DQPQSTSGNG ALAFDMEYAR 120 WLEEHNKHVN ELRLAVNAHA GDNDLRGIVG SVMAHYDEFF RLKGVAARSD VFHVLSGMWK 180 TPAERCFMWL GGFRSSEVLK LLAGHLEPLT DQQLVGISNL QQSSQQAEDA LSQGMEALQQ 240 SLAETLASGS LGPAGPSGNV ANYMGQMAMA MGKLGTLENF LRQADNLRLQ TLQQMQRILT 300 TRQSARALLA ISDYFSRLRA LSSLWLARP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.129 | 0.0 | pericarp| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G019907 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G019907_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034456 | 0.0 | BT034456.1 Zea mays full-length cDNA clone ZM_BFc0173A06 mRNA, complete cds. | |||
GenBank | X69153 | 0.0 | X69153.1 Z.mays OBF3.1 mRNA for ocs-element binding factor 3.1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105735.1 | 0.0 | uncharacterized protein LOC542756 | ||||
Refseq | XP_020405653.1 | 0.0 | uncharacterized protein LOC542756 isoform X1 | ||||
Refseq | XP_020405656.1 | 0.0 | uncharacterized protein LOC542756 isoform X4 | ||||
Swissprot | Q41558 | 0.0 | HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment) | ||||
TrEMBL | Q06978 | 0.0 | Q06978_MAIZE; Ocs-element binding factor 3.1 | ||||
STRING | Sb03g037560.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06950.4 | 1e-147 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G019907_P02 |