PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G019446_P02 | ||||||||
Common Name | Zm.16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 339aa MW: 35969.8 Da PI: 5.4202 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41.5 | 2.9e-13 | 148 | 199 | 5 | 56 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 + +rrkq+NRe+ArrsR RK a + eLe v +L eN++L +l +++ GRMZM2G019446_P02 148 RLQRRKQSNRESARRSRSRKAAHLNELEAQVSQLRVENSSLLRRLADVNQKF 199 679**************************************98887777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.5E-15 | 143 | 208 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.139 | 146 | 201 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 6.2E-10 | 148 | 200 | No hit | No description |
Pfam | PF00170 | 3.0E-10 | 148 | 197 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.2E-9 | 148 | 198 | No hit | No description |
Pfam | PF12498 | 9.0E-50 | 215 | 332 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MERVFSVEEI PNPYWVPPHP QSAAASSSVV DPVEYNAMLK QKLEKDLAAV ALWRASGAAP 60 PDHSPAGSSL PSVDVPHAGP LKPIGGTGSL VQNKLVGAPG GGSSPHVVQN ADIPVKQTTS 120 SSSREQSDDD DMEGDAETTG NGNPVQHRLQ RRKQSNRESA RRSRSRKAAH LNELEAQVSQ 180 LRVENSSLLR RLADVNQKFN EAAVDNRVLK ADVETLRAKV KMAEDSVKRV TGMNTLFPAV 240 SDMSSLSMPF NGSPSDSASD AAVPIQDDLN SYFANPSEIG GSNGYMPDIA SSVQEDDDFV 300 NGAQVAGKMG STDSLQRVAS LEHLQKRMCG GPASSGSTS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.16 | 0.0 | ear| meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G019446 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in developing seeds from 5 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:11572990, ECO:0000269|PubMed:9049271}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G019446_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT037088 | 0.0 | BT037088.1 Zea mays full-length cDNA clone ZM_BFb0154C21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008665595.1 | 0.0 | bZIP transcription factor RISBZ2 isoform X1 | ||||
Swissprot | Q7X9A8 | 1e-155 | RSBZ2_ORYSJ; bZIP transcription factor RISBZ2 | ||||
TrEMBL | B4FJ00 | 0.0 | B4FJ00_MAIZE; Uncharacterized protein | ||||
TrEMBL | K4JRQ0 | 0.0 | K4JRQ0_MAIZE; BZIP-type transcription factor (Fragment) | ||||
STRING | GRMZM2G019446_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28770.2 | 7e-35 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G019446_P02 |
Publications ? help Back to Top | |||
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