PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G019443_P01
Common NameEREB82, LOC103633756, Zm.125339
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 322aa    MW: 34366.3 Da    PI: 9.6417
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G019443_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.6e-194595155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       s++ GVr+++ +grWvAeI+d +   ++ r++lg+f tae Aa+a+++a+  l+g
  GRMZM2G019443_P01 45 SKFVGVRQRP-SGRWVAEIKDTT---QKVRVWLGTFETAEAAARAYDEAACLLRG 95
                       79********.7*********32...35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-134595IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-1945103IPR016177DNA-binding domain
CDDcd000187.38E-1845105No hitNo description
PROSITE profilePS5103220.04746103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-2846103IPR001471AP2/ERF domain
SMARTSM003807.5E-3646109IPR001471AP2/ERF domain
PRINTSPR003671.2E-74758IPR001471AP2/ERF domain
PRINTSPR003671.2E-76985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MELQFHPQQH HSYQQQQQPP PPATKEPKPK PRTRTKCGGG GGGSSKFVGV RQRPSGRWVA  60
EIKDTTQKVR VWLGTFETAE AAARAYDEAA CLLRGANTRT NFAAAPPPDS PLAARIRGIL  120
DHNNNNGRTP PKKTLPHRPT AARFFPAAAA STASTCSSTA SPTSSSPSSS ISFATSTHAR  180
APIPTLPDPR SQSATEEAYY APYSATGGGE EFQLAATTHQ YEQQSWALNA ASSPLTPPPP  240
PDARDVGSVN ARRLAVAAET GRDRMIKLEK KSSSASLSLS PHGVIDRGPD KDLAFDVGND  300
ASDSLWDLPP ICPLSSCRSM MF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1338102471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1253390.0endosperm| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G019443
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G019443_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276620.0KJ727662.1 Zea mays clone pUT5589 AP2-EREBP transcription factor (EREB82) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008653669.10.0ethylene-responsive transcription factor ABI4
TrEMBLA0A060D6C70.0A0A060D6C7_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G019443_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-23related to AP2 11