PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G019335_P01
Common Namecl359_1(434), Orphan179, ZEAMMB73_777196
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family DBB
Protein Properties Length: 253aa    MW: 27234.4 Da    PI: 4.7373
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G019335_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.21.5e-07446541
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                        C+ +e   ++  C  ++  lC+ C +e+H        H++ p
  GRMZM2G019335_P01  4 QCDACEGAAATVVCCADEAALCARCDVEIHAAnklaskHQRLP 46
                       7******99*********************6678888898877 PP
2zf-B_box26.81.1e-085485334
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                        ++C+ ++ek + +fC +++ l+C+dC + +H
  GRMZM2G019335_P01 54 LPRCDVCQEKAAFIFCVEDRALFCRDCDEPIH 85
                       689**************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.011147IPR000315B-box-type zinc finger
CDDcd000219.60E-6347No hitNo description
SMARTSM003362.1E-9447IPR000315B-box-type zinc finger
PfamPF006431.1E-5447IPR000315B-box-type zinc finger
SMARTSM003368.2E-145299IPR000315B-box-type zinc finger
PROSITE profilePS501198.665299IPR000315B-box-type zinc finger
CDDcd000211.96E-65585No hitNo description
PfamPF006432.0E-65595IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MKIQCDACEG AAATVVCCAD EAALCARCDV EIHAANKLAS KHQRLPLEAL SASLPRCDVC  60
QEKAAFIFCV EDRALFCRDC DEPIHVPGTL SGNHQRYLAT DIRVGFASAS SACSDACDAH  120
DDSDHHAPPK AAVSSAAQQV PSPPQFLPQG WAVDELLQFS DCESSDKLHK ESPLGFKELE  180
WFTDIDLFHE QTPKAGRRLA EVPELSGTQA ANDAAYYRPA KATATAGAGV RQSKKARTEV  240
TDDEDHLIVP DLG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1183950.0ear| endosperm| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G019335
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G019335_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0418180.0BT041818.1 Zea mays full-length cDNA clone ZM_BFb0060E09 mRNA, complete cds.
GenBankEU9561910.0EU956191.1 Zea mays clone 1558749 salt tolerance-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141667.10.0uncharacterized LOC100273793
SwissprotQ9SID12e-76BBX25_ARATH; B-box zinc finger protein 25
TrEMBLB4FXI00.0B4FXI0_MAIZE; B-box zinc finger protein 24
STRINGGRMZM2G019335_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32023368
Representative plantOGRP53971020
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.14e-74DBB family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]