PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G018984_P02 | ||||||||
Common Name | EREB180, LOC100192457 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 340aa MW: 36889.4 Da PI: 4.9067 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.1 | 4.4e-18 | 101 | 150 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp + +r++lg+f tae+Aa+a++ +++l+g GRMZM2G018984_P02 101 QFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFSTAEDAARAYDVEARRLRG 150 69*******.**********72....35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.9E-32 | 100 | 159 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-21 | 101 | 159 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.0E-37 | 101 | 164 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.499 | 101 | 158 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.55E-29 | 101 | 160 | No hit | No description |
PRINTS | PR00367 | 3.3E-11 | 102 | 113 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-10 | 102 | 150 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-11 | 124 | 140 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MCGGAILAEL IPPTRRVASK PVTEGHLWSA SSKKAGSGRD KRHQHEYADD DFEAAFEDFD 60 DDFDVHEDDE DGHFVFSSKS ALSPALHDGR AASQKKQRGR QFRGIRQRPW GKWAAEIRDP 120 HKGTRVWLGT FSTAEDAARA YDVEARRLRG SKAKVNFPAA SGRARGRARP RRGDDGNPRT 180 APETQHPAQP ALLPRGERET QRKEGIAAVK PEATESFDVG GGLFFDMAFP TFPASPPPQA 240 VDTSFAGSTA TSETGSPAKR PRCDEDSSEG GSGSALELAD ELAFDPFVLL QMPYSGGYDD 300 DSLDGLFAAD EAVQQDVGNG MDGVRLWSFD EFPAVDGSVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-22 | 98 | 158 | 2 | 63 | ATERF1 |
3gcc_A | 6e-22 | 98 | 158 | 2 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.80457 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G018984 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G018984_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039300 | 0.0 | BT039300.1 Zea mays full-length cDNA clone ZM_BFc0004M21 mRNA, complete cds. | |||
GenBank | EU970244 | 0.0 | EU970244.1 Zea mays clone 342610 root abundant factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001336749.1 | 0.0 | uncharacterized protein LOC100192457 | ||||
TrEMBL | B4FQB2 | 0.0 | B4FQB2_MAIZE; AP2-EREBP transcription factor | ||||
STRING | GRMZM2G018984_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7987 | 30 | 40 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 5e-23 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G018984_P02 |
Publications ? help Back to Top | |||
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