PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G018553_P01
Common Namepco133091
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 302aa    MW: 33831.2 Da    PI: 7.0636
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G018553_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.34.4e-51191491128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtd+elv +yL++k++g++l++  +i+evd+y+++PwdLp+++  + +ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v
  GRMZM2G018553_P01  19 LPPGFRFHPTDDELVEHYLCRKAAGQRLPV-PIIAEVDLYRFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGDGYWKATGADKPV 109
                        79****************************.88***************8777899************************************* PP

                NAM  93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +    + ++ g+kk Lvfy g+ap+g+ktdW+mheyrl
  GRMZM2G018553_P01 110 APRaaaaDARTLGIKKALVFYAGKAPRGVKTDWIMHEYRL 149
                        99888877888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-6215174IPR003441NAC domain
PROSITE profilePS5100560.12519174IPR003441NAC domain
PfamPF023657.0E-2720149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGQPVTRRRE RDAEAELDLP PGFRFHPTDD ELVEHYLCRK AAGQRLPVPI IAEVDLYRFD  60
PWDLPERALF GAREWYFFTP RDRKYPNGSR PNRAAGDGYW KATGADKPVA PRAAAADART  120
LGIKKALVFY AGKAPRGVKT DWIMHEYRLA DAGRRAKKGS LRLDDWVLCR LYNKKNEWEK  180
MRLGKGAAAG AVKEEEAMDM STSHSQITHS WGETRTPESE IVDNDLPFPD PAMMVPKKER  240
VDDGGSARTS DLFVDLSYDD IQGMYSGLDM LPPAGEDLYS SLFASPRVRG NQPTGPAGLG  300
PF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-10681804174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1376260.0endosperm| ovary| pericarp| pollen| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G018553
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and stamens. {ECO:0000269|PubMed:16924117}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G018553_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stresss, salt stress and cold stress (PubMed:16924117, PubMed:20632034). Induced by abscisic acid (ABA) (PubMed:16924117). Induced by methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0541130.0BT054113.1 Zea mays full-length cDNA clone ZM_BFb0108F08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340492.10.0uncharacterized protein LOC100273092
SwissprotQ75HE51e-154NAC2_ORYSJ; NAC domain-containing protein 2
TrEMBLA0A1D6GER60.0A0A1D6GER6_MAIZE; NAC domain-containing protein 2
STRINGGRMZM2G018553_P010.0(Zea mays)
STRINGGRMZM2G336533_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44143071
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.12e-78NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  3. Chen Q,Wang Q,Xiong L,Lou Z
    A structural view of the conserved domain of rice stress-responsive NAC1.
    Protein Cell, 2011. 2(1): p. 55-63
    [PMID:21337010]