PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G018487_P02
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 397aa    MW: 42797.9 Da    PI: 10.5926
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G018487_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.8e-31332390259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  GRMZM2G018487_P02 332 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 390
                        69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.0E-16285329IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.9E-34319391IPR003657WRKY domain
PROSITE profilePS5081129.757326392IPR003657WRKY domain
SuperFamilySSF1182908.89E-27329390IPR003657WRKY domain
SMARTSM007742.5E-38331391IPR003657WRKY domain
PfamPF031068.8E-27333389IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEGMEEANRT AVESCHRVLA LLSNPHGQLV PSKELVAATG EAVAKFGSLT AKLSNSNGDG  60
LLQGHARVRK VKKPLHIFDS NLFLESSAVA AAAAPAKTPS PSPILGLQLF PRYHQFEGSS  120
SKDPVRIPTQ FPKRLLLEKP TAGMEGSTSQ SPPIVQMVQP VSVAPPAGTP TPALPPAHLH  180
FIQQQQSYQR FQLMQQMKIQ SEMMKRSNLG DQGGSLSGGG GGGRKGVNLK FDSSNCTASS  240
SRSFLSSLSM EGSLASLDGS RTSRPFQLLS GSQTASTPEL GLVQRRRCAG REDGTGRCAT  300
GSRCHCSKKR KLRIRRSIKV PAISNKVADI PADEFSWRKY GQKPIKGSPH PRGYYKCSSV  360
RGCPARKHVE RCVDDPSMLI VTYEGDHNHN RVLAQPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-193293901272WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.935240.0cell lignification| ear| embryo| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G018487
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: More abundant in apices and young leaf primordia than in fully expanded leaf tissues. {ECO:0000269|PubMed:16243907}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G018487_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
IntActSearch Q32SG4
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9406800.0AY940680.1 Zea mays WRKY1 mRNA, complete cds.
GenBankBT0839930.0BT083993.1 Zea mays full-length cDNA clone ZM_BFb0063A21 mRNA, complete cds.
GenBankEU9561730.0EU956173.1 Zea mays clone 1558475 WRKY transcription factor 21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105837.10.0protein WRKY1
RefseqXP_008649271.10.0protein WRKY1 isoform X1
SwissprotQ32SG40.0WRKY1_MAIZE; Protein WRKY1
TrEMBLB6STV80.0B6STV8_MAIZE; Protein WRKY1
STRINGGRMZM2G018487_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.14e-50WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Phelps-Durr TL,Thomas J,Vahab P,Timmermans MC
    Maize rough sheath2 and its Arabidopsis orthologue ASYMMETRIC LEAVES1 interact with HIRA, a predicted histone chaperone, to maintain knox gene silencing and determinacy during organogenesis.
    Plant Cell, 2005. 17(11): p. 2886-98
    [PMID:16243907]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]