PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G018472_P01
Common NameLOC103640548
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 339aa    MW: 35440.8 Da    PI: 4.9113
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G018472_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.12.4e-16182229355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +ahn  E+rRR++iN++f +L++++P +      K + a++L ++++Y+ksLq
  GRMZM2G018472_P01 182 EAHNLTEKRRRHKINERFKTLQQIVPGC-----SKSNQASTLDQTIHYMKSLQ 229
                        58*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-18176237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.514179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-14182229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.02E-16182233No hitNo description
Gene3DG3DSA:4.10.280.101.5E-19182237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-16185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007015developmental stageradicle emergence stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007045developmental stagecoleoptile emergence stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MNYPDAAADP WCCYSNNAGE AAAAAAVPTS GEEASRFFGD MVAAADYSTD DLFELVLEQE  60
GGAPGPGSMH PTVSCVWSSR FSKPPDVRFD PPSEDEMAAW LCTIVNGDEP ACNDDNGDGD  120
RLAADDGQED GVPVMGTSTT TADKKEKAPT TTTVEGMMIM GNKEMRKAPA GGGSSRRSHH  180
GEAHNLTEKR RRHKINERFK TLQQIVPGCS KSNQASTLDQ TIHYMKSLQH QVQAMSSAGL  240
LAPAAAAYPA VVQPRCVPLG TTPPVPFQAA APTTMVLGGY HPPSSPATMV PFGTTAVLQL  300
PHYPGDAAAV MVPVEPLYPA AAAPAAAAKG RAVAACVCE
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G018472
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G018472_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9441981e-128EU944198.1 Zea mays clone 207719 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020398223.11e-135transcription factor PIF1
TrEMBLA0A1D6KFF50.0A0A1D6KFF5_MAIZE; Transcription factor PIF4
STRINGGRMZM2G018472_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Representative plantOGRP10440410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.16e-18phytochrome interacting factor 3-like 5