PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G018398_P01
Common NameEREB14, pco095978, ZEAMMB73_981849
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 361aa    MW: 39462.8 Da    PI: 4.443
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G018398_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-19115164255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+G+r+++ +g+W+AeIrdp     +  r++lg+f ++eeAa+a++a +++++g
  GRMZM2G018398_P01 115 QYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNSPEEAARAYDAEARRIRG 164
                        69*******.**********94....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-35115178IPR001471AP2/ERF domain
CDDcd000181.56E-31115174No hitNo description
PROSITE profilePS5103223.67115172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-32115173IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21115173IPR016177DNA-binding domain
PfamPF008475.7E-12116164IPR001471AP2/ERF domain
PRINTSPR003671.1E-10116127IPR001471AP2/ERF domain
PRINTSPR003671.1E-10138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MCGGAILAEL REPAPRRLTE RDIWQQKKKP KRGGAGGRRS FAAEDDEDFE ADFEDFEADS  60
GDSDLELGEG ADDDVIEIKP FAAKSTFSRD GLSTMTTAGY DAPAARLAKR KRKNQYRGIR  120
QRPWGKWAAE IRDPQKGVRV WLGTFNSPEE AARAYDAEAR RIRGKKAKVN FPDAPAVGQK  180
CRSSSASAKA LKSCVEQKPI VKTDMNILAN TNAPFYQSVN YASNNPFVPA MNSTVSFEDP  240
IMNLHSDQGS NSLGCSDLGW ENDTKTPDIT SIAPIPTIAE GDESVFVNSN SNSSMVPPVL  300
ENNAVDLTDG LTDLESYMRF LMDGGASDSI DSLLNLDGSQ DLGSNMDLWT FDDMPIAGDF  360
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-19114172160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-19115172563ATERF1
3gcc_A2e-19115172563ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1179180.0aerial organ| ear| endosperm| leaf| meristem| pericarp| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G018398
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G018398_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0432080.0BT043208.1 Zea mays full-length cDNA clone ZM_BFc0121B01 mRNA, complete cds.
GenBankBT0881100.0BT088110.1 Zea mays full-length cDNA clone ZM_BFc0024A11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148691.10.0uncharacterized protein LOC100282307
SwissprotQ6K7E61e-152ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A3L6F8850.0A0A3L6F885_MAIZE; Ethylene-responsive transcription factor 1
TrEMBLB4G1H00.0B4G1H0_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G018398_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.24e-26related to AP2 12
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  4. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  5. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  6. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  7. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]