PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G018336_P01 | ||||||||
Common Name | ABI33, ZEAMMB73_082033, Zm.144802 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 242aa MW: 25699.1 Da PI: 10.1641 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 100.1 | 1.3e-31 | 53 | 148 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+ tpsdv+k++rlv+pk++ae+h gg + +++ l led g++W+++++y+++s++yvltkGW++Fvk++gL++gD+v F+ GRMZM2G018336_P01 53 FDKAVTPSDVGKLNRLVIPKQHAERHfplhlaaaaGGGESTGVLLNLEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLQAGDVVGFY 144 89*********************************7777899************************************************** PP E-SS CS B3 84 ldgr 87 ++ GRMZM2G018336_P01 145 RSAA 148 7644 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.6E-39 | 47 | 168 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.09E-30 | 51 | 156 | No hit | No description |
SuperFamily | SSF101936 | 6.54E-30 | 51 | 149 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.0E-28 | 53 | 155 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-22 | 53 | 161 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.846 | 53 | 162 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MLRKHTYFDE LAQNKRAFAA AAAAASSAAA TTSTSLGNDN RSSSPACARE HLFDKAVTPS 60 DVGKLNRLVI PKQHAERHFP LHLAAAAGGG ESTGVLLNLE DAAGKVWRFR YSYWNSSQSY 120 VLTKGWSRFV KEKGLQAGDV VGFYRSAAGA DSKLFIDCKL RPNSVDTAST TSPVGSSPPP 180 APVAKAVRLF GVDLLTAPAD AMARCKRARD LASPPQAAIK KQLVELALAS VDQCYGAGRS 240 FS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-51 | 49 | 162 | 4 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-51 | 49 | 162 | 4 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.84705 | 1e-161 | cell culture| ear| endosperm| meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G018336 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G018336_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ727884 | 0.0 | KJ727884.1 Zea mays clone pUT5977 ABI3VP1 transcription factor (ABI33) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020398136.1 | 1e-175 | AP2/ERF and B3 domain-containing protein Os01g0693400 isoform X1 | ||||
Swissprot | Q8RZX9 | 3e-99 | Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400 | ||||
TrEMBL | A0A1D6G2Q7 | 1e-174 | A0A1D6G2Q7_MAIZE; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | A0A3L6DRN2 | 1e-174 | A0A3L6DRN2_MAIZE; AP2/ERF and B3 domain-containing protein | ||||
TrEMBL | K7V0T7 | 1e-176 | K7V0T7_MAIZE; ABI3VP1 transcription factor (Fragment) | ||||
STRING | GRMZM2G018336_P01 | 1e-177 | (Zea mays) | ||||
STRING | GRMZM2G065538_P01 | 1e-177 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 | Representative plant | OGRP365 | 16 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25560.1 | 6e-59 | RAV family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G018336_P01 |