PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G018254_P01 | ||||||||
Common Name | GRAS48, LOC100279519, ZEAMMB73_329052 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GRAS | ||||||||
Protein Properties | Length: 648aa MW: 71808 Da PI: 6.0844 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 320.7 | 2.9e-98 | 275 | 644 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 l++lL++cAeavs+g+ a++lL ++++++sp+gd+ qRla++f+++L+ rla+ +p++++ ++ l+a+ l +v+ + GRMZM2G018254_P01 275 LRTLLVHCAEAVSTGNRPGATELLRQIRQRSSPRGDASQRLAHCFAQGLELRLAG------TGAKPKRAP--AGVHLLKAYLLSMQVCCFRM 358 6789***************************************************......333343333..59999*************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182 +++ + aI +av+g ++vHi+D+++ +G++W+ Ll a a+R +gpp++RiTg++ p++g s++++e g+rL++fA+++gvpf+f+ +v GRMZM2G018254_P01 359 VAFKSCHMAISKAVAGRKKVHIVDYGVDHGFHWLLLLGAWATRVGGPPEVRITGIDFPQPGfrSATRTEGAGRRLSDFARQCGVPFKFRSIV 450 ************************************************************9******************************* PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 a+++e++ e+L+++p+E+l+Vn + +l+d+++ + +rd vL + +++P+v+v+ +++hn++ F++rf eal yysalfd++ GRMZM2G018254_P01 451 ATKWEMIFAEDLEIEPDEVLVVNGLFYFGKLMDDEGVDGDcpsPRDMVLGNISRMRPEVFVLYVDNSSHNAPFFATRFREALFYYSALFDMM 542 ********************************98764443344************************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363 +a+ pr+s++r+ vErellgr + nv++ceg+er+er et+++W+ r ++aG++++pl+ +++k + l+++ + + + ++ ++++l++gWk GRMZM2G018254_P01 543 DATTPRDSDDRVLVERELLGRCALNVITCEGSERVERPETYRQWQVRCSRAGLRQLPLDPSTVKCLSDLVKEGYHKDFVIDVDQQWLLQGWK 634 ************************************************************************99888*************** PP GRAS 364 drpLvsvSaW 373 +r L+++S W GRMZM2G018254_P01 635 GRILYAMSTW 644 ********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 56.092 | 249 | 625 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-95 | 275 | 644 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 648 aa Download sequence Send to blast |
MHPHHTHTHQ RETAMAPTPE DPAADDSEPF SPSIFLDLPP TPHPGDDGKD SMIDLHFIRR 60 LLMEDDDVQF QYADHHALLQ AAEEPFAQIL AGSAGSSVSG SATADTTAIY YPDGTGFHFH 120 QQTAGPTSTT GDDGVVTMDM LNRAFLKGME EANKFLPVVA SSTHTSLLCR DYASKHRVVD 180 GIGMPLFFQE SSGNNRRGRG CHHDDDGDDE ADTRSAKLIA PELEESGEVT DGVFLRGYEV 240 ALEKMNGLST NVPGAMSRQG QGRQQRSSGN EAVDLRTLLV HCAEAVSTGN RPGATELLRQ 300 IRQRSSPRGD ASQRLAHCFA QGLELRLAGT GAKPKRAPAG VHLLKAYLLS MQVCCFRMVA 360 FKSCHMAISK AVAGRKKVHI VDYGVDHGFH WLLLLGAWAT RVGGPPEVRI TGIDFPQPGF 420 RSATRTEGAG RRLSDFARQC GVPFKFRSIV ATKWEMIFAE DLEIEPDEVL VVNGLFYFGK 480 LMDDEGVDGD CPSPRDMVLG NISRMRPEVF VLYVDNSSHN APFFATRFRE ALFYYSALFD 540 MMDATTPRDS DDRVLVEREL LGRCALNVIT CEGSERVERP ETYRQWQVRC SRAGLRQLPL 600 DPSTVKCLSD LVKEGYHKDF VIDVDQQWLL QGWKGRILYA MSTWAADR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 8e-43 | 279 | 644 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G018254 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G018254_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726952 | 0.0 | KJ726952.1 Zea mays clone pUT3646 GRAS transcription factor (GRAS48) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001145990.2 | 0.0 | uncharacterized protein LOC100279519 | ||||
Swissprot | O80933 | 1e-122 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | K7TQ87 | 0.0 | K7TQ87_MAIZE; GRAS transcription factor (Fragment) | ||||
STRING | GRMZM2G018254_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 | Representative plant | OGRP19812 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-124 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G018254_P01 |