PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G017586_P01 | ||||||||
Common Name | bHLH172, TIDP2894, ZEAMMB73_842128 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 253aa MW: 27556.3 Da PI: 5.0455 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.9 | 5.1e-10 | 87 | 134 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rEr RR+++N++f eL + l + + K +Ka+iL A++ + +L GRMZM2G017586_P01 87 SKACRERMRRNKLNDRFLELGSALEPG---KPVKADKAAILSDATRMVIQL 134 6789**********************9...99*************988777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.46E-13 | 81 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.998 | 83 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.37E-8 | 86 | 139 | No hit | No description |
Pfam | PF00010 | 2.2E-7 | 87 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-12 | 87 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.8E-9 | 89 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MSLPPGPADS GTGTGDDWFL DCGILDDLPA AACGAFPWDA SPSSSNPSVE VGSYVNANDA 60 FKEPNDVFKE PGSSKRLRSG SSDMPTSKAC RERMRRNKLN DRFLELGSAL EPGKPVKADK 120 AAILSDATRM VIQLRSESQQ LKETNGSLEE KIKELKAEKD ELRDEKQKLK LEKESLEHQM 180 KLMASAPAYM PHPTLMPAPF AQAPLAPFHA QGQAAGQKLM MPFVGYPGYP MWQFMPPSEV 240 DTSKDSEACP PVA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.118136 | 0.0 | cell lignification| endosperm| meristem| ovary| pollen| root| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G017586 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G017586_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039742 | 0.0 | BT039742.1 Zea mays full-length cDNA clone ZM_BFc0042O08 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021320712.1 | 1e-166 | transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 3e-69 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | B4FRK4 | 0.0 | B4FRK4_MAIZE; BHLH transcription factor | ||||
STRING | GRMZM2G017586_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2023 | 38 | 85 | Representative plant | OGRP755 | 17 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 9e-46 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G017586_P01 |
Entrez Gene | 100284429 |