PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G017349_P01 | ||||||||
Common Name | bHLH125, LOC100193167, ZEAMMB73_319117 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 312aa MW: 33560.6 Da PI: 6.5209 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.1 | 2.4e-16 | 109 | 155 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR++iN+++ L++l+P++ K +Ka++L +A+eY+k+Lq GRMZM2G017349_P01 109 VHNLSEKRRRSKINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 155 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.81E-21 | 102 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-20 | 103 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.076 | 105 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.22E-18 | 108 | 159 | No hit | No description |
Pfam | PF00010 | 8.9E-14 | 109 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-18 | 111 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MNEQGLGGLG GGRGAVQGHG REAMALLQHQ QLQQQRRQLE EEDEVRRQMF GGVAAFPAAL 60 GHGQQVDYGE DAGGLGDSDA GGSEPEPPPE RTRGGSGGGG GKRSRAAEVH NLSEKRRRSK 120 INEKMKALQS LIPNSNKTDK ASMLDEAIEY LKQLQLQVQM LSMRNGVYLN PPYLSGTIEP 180 AQASQMFAAV GGGNITASSS GAVMPPVNQS SGLQVFDPLN PPRDQPLSFV LPNVDKTIQE 240 APFHLESSQF HPRPFRMPES SEMMLPGEVV AKHQLTSIQG RVSMPGIGMN PIRQESSTVK 300 ADQFDGCSHS KE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 92 | 101 | RGGSGGGGGK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.96541 | 0.0 | meristem| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G017349 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00035 | PBM | Transfer from AT4G36930 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G017349_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035360 | 0.0 | BT035360.1 Zea mays full-length cDNA clone ZM_BFb0057H06 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001131794.1 | 0.0 | uncharacterized protein LOC100193167 | ||||
Refseq | XP_008658091.1 | 0.0 | putative HLH DNA-binding domain superfamily protein isoform X1 | ||||
TrEMBL | B4FE22 | 0.0 | B4FE22_MAIZE; BHLH transcription factor | ||||
STRING | GRMZM2G017349_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3336 | 37 | 76 | Representative plant | OGRP258 | 16 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 3e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G017349_P01 |
Entrez Gene | 100193167 |