PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G017187_P02
Common NameARF6, Zm.6451
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 657aa    MW: 72950.4 Da    PI: 6.1403
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G017187_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.62.7e-24125225198
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++ +++aee+      ++++++ ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F+  +
  GRMZM2G017187_P02 125 FCKTLTASDTSTHGGFSVLRRHAEEClpqldmSQNPPC-QELVAKDLHGTEWHFRHIFRGQPKRHLLTTGWSVFVSSKRLVSGDAFIFM--R 213
                        99*****************************7556666.59************************************************..4 PP

                        SSEE..EEEEE- CS
                 B3  87 rsefelvvkvfr 98 
                         +++el+v+v+r
  GRMZM2G017187_P02 214 GENGELRVGVRR 225
                        49999*****97 PP
2Auxin_resp102.45.9e-34251336183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsLk 83 
                        a+ha+st++ F+v+Y+Pr+s+s+F+v+v+k+++a k+k+svGmRfkm+fe++d++err+sGt++g+     ++ + W +S WrsLk
  GRMZM2G017187_P02 251 ASHAISTGTLFSVFYKPRTSRSDFIVSVNKYLEAKKQKISVGMRFKMRFEGDDAPERRFSGTIIGIGSlpaMSKSLWADSDWRSLK 336
                        789**************************************************************98622266778********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-44110254IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-41122240IPR015300DNA-binding pseudobarrel domain
CDDcd100178.35E-21123225No hitNo description
PROSITE profilePS5086311.674125227IPR003340B3 DNA binding domain
PfamPF023621.3E-21125225IPR003340B3 DNA binding domain
SMARTSM010192.7E-20125227IPR003340B3 DNA binding domain
PfamPF065072.1E-32251336IPR010525Auxin response factor
PfamPF023095.6E-11536635IPR033389AUX/IAA domain
PROSITE profilePS5174526.12546639IPR000270PB1 domain
SuperFamilySSF542778.5E-11548625No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MDAPNPGAAA GPGMPSDALY QELWHACAGP LVTVPRQGER VYYFPQGHME QLEASAHHQQ  60
LDQYLPMFDL PPKILCRVVN VELRAEADSD EVYAQIMLQP EADQNELTSL DAEPQEREKC  120
TAHSFCKTLT ASDTSTHGGF SVLRRHAEEC LPQLDMSQNP PCQELVAKDL HGTEWHFRHI  180
FRGQPKRHLL TTGWSVFVSS KRLVSGDAFI FMRGENGELR VGVRRLMRQV NSMPSSVISS  240
HSMHLGVLAT ASHAISTGTL FSVFYKPRTS RSDFIVSVNK YLEAKKQKIS VGMRFKMRFE  300
GDDAPERRFS GTIIGIGSLP AMSKSLWADS DWRSLKVQWD EPSSILRPDR ISPWEVEPLD  360
AANPQSPQPP LRAKRPRPPA SPCMVSELPS GFGLWKSPIE SSCTLSFSEP QRARELFPSI  420
PTSTLSSSSN VSFNSKNEPS MLTSQFYWSA RHTRADSCAA STNTVVIEKK QEPSSGGCRL  480
FGINICSAEE EVLPEVTAPG VGYEQTAASV ELNSDKLSQP SDVNNSDALA ASSERSPLES  540
QSRQVRSCTK VIMQGMAVGR AVDLTKLSGY SDLCQKLEEM FDIQGELGST LKKWRVIFTD  600
DEDDMMLVGD DPWDEFCRMV KRIYIYTYEE AKKLTSKSKL PVSSDSSKLS AANSLSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.013611357Auxin response factor 1
4ldw_A0.013611357Auxin response factor 1
4ldw_B0.013611357Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373377KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.64510.0ear| embryo| meristem| ovary| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G017187
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G017187_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008669375.10.0auxin response factor 9
SwissprotQ0JCZ40.0ARFI_ORYSJ; Auxin response factor 9
TrEMBLA0A1D6E9Y10.0A0A1D6E9Y1_MAIZE; Auxin response factor
TrEMBLD9HNT30.0D9HNT3_MAIZE; Auxin response factor
STRINGGRMZM2G017187_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.20.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]