PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G016434_P01
Common NameLOC103628663, Zm.145524
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 408aa    MW: 42991.5 Da    PI: 8.857
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G016434_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.9e-19222271255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp     + +r++lg+f+tae Aa+a+++a+++++g
  GRMZM2G016434_P01 222 HYRGVRRRP-WGKWAAEIRDPA----KaARVWLGTFDTAEAAAAAYDRAALQFKG 271
                        7********.**********83....36***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-31221280IPR001471AP2/ERF domain
PROSITE profilePS5103225.014222279IPR001471AP2/ERF domain
SMARTSM003801.4E-33222285IPR001471AP2/ERF domain
PfamPF008471.5E-12222271IPR001471AP2/ERF domain
CDDcd000181.51E-19222280No hitNo description
SuperFamilySSF541717.19E-22222280IPR016177DNA-binding domain
PRINTSPR003674.0E-11223234IPR001471AP2/ERF domain
PRINTSPR003674.0E-11245261IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MLFASSPKQA NLHTVITVTG TISLSPRSRL GQSNTQGGGG QYQDQIQSEL REKGIVIDRS  60
KVDHRRHDSG SKRTLPEPDG EEAAAAAAQS SASRSLGSSQ ERYFPRRRQQ QIELGGSGGG  120
GHDHDDRYYS PAAVPAPGRY HEQAEQQGAV YSSTTMAYYD DVGTHSASSS LQPGDSAAAA  180
VPVATESPHQ RLPLEAGSAG CSSAVGQAVE VQEGTLTTTM RHYRGVRRRP WGKWAAEIRD  240
PAKAARVWLG TFDTAEAAAA AYDRAALQFK GAKAKLNFPE RVRGRTGQGA FLVSPGIPQP  300
PPVSAPLLPP SPVPFPDLMR YAQLLHSGNV AAASASTAHD LAPSSQQSPV QILDFSTRRL  360
LLRGSPPATF GRPSMASSTA ASSTSMPVPH VEDKDSGAGE EGGTAPPD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-24221282466ATERF1
3gcc_A3e-24221282466ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G016434
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G016434_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057495e-67AP005749.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0047A17.
GenBankAP0058425e-67AP005842.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0003H22.
GenBankAP0149585e-67AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126105e-67CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankCT8313305e-67CT831330.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA126O21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008647050.10.0ethylene-responsive transcription factor ABI4 isoform X2
TrEMBLA0A3L6EUV10.0A0A3L6EUV1_MAIZE; Ethylene-responsive transcription factor ERF113
STRINGGRMZM2G016434_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.13e-28related to AP2 6l