PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G016370_P01
Common NameGLK5, ZEAMMB73_872572, Zm.93172
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 453aa    MW: 48702.2 Da    PI: 6.5125
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G016370_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1017.8e-32275330156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k+r++W+peLH+rF++a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  GRMZM2G016370_P01 275 KARRCWAPELHRRFLQALQQLGGSHVATPKQIRELMNVDGLTNDEVKSHLQKYRLH 330
                        68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.015272332IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-28273333IPR009057Homeodomain-like
SuperFamilySSF466895.32E-17273333IPR009057Homeodomain-like
TIGRFAMsTIGR015577.2E-27275330IPR006447Myb domain, plants
PfamPF002499.6E-7277328IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MEMDPPPPPP LHADRRLRFR DYLLALEEER RKIQVFQREL PLCLDLVTQT IEGMRSHMDS  60
VVVGSEETVS DHGGPVLEEF MPLKPTTLSS SSSQPQSQDD HDSAHYLEHR RAAAATANDV  120
VDADKDDEAL GDPETAAASS SRPLPHPETK KAMPDWLQSV QLWSNQQQPS VSPPQHQDEL  180
LLPCRPVALN ACRKSGGAFQ PFEKEKKKED KEEKQRAELE LPLPAAASSA VVGDSCDRAG  240
ATDTDTDTAE NNKASSTKGG KDKEAQLSSQ APSRKARRCW APELHRRFLQ ALQQLGGSHV  300
ATPKQIRELM NVDGLTNDEV KSHLQKYRLH TRRPNSAAAA VQSGGTSVVA PPAAPQFVVV  360
GGIWVPPPEY AAAAAAQPQQ VHVHLAGDAS GTTTTAADKV YAPVATTLTP APRPRPRPGP  420
ERQSSSCSGA RRNGDACSGS PAVSSSSSQT ASA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-13275328154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-13275328154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-13275328154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-13275328154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G016370
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G016370_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate. {ECO:0000269|PubMed:23324170}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0355360.0BT035536.2 Zea mays full-length cDNA clone ZM_BFb0068J14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131917.20.0uncharacterized protein LOC100193306
SwissprotQ6Z8691e-112NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBLA0A3L6GAQ10.0A0A3L6GAQ1_MAIZE; Transcription factor NIGT1
TrEMBLB4FEJ80.0B4FEJ8_MAIZE; G2-like transcription factor
STRINGGRMZM2G016370_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64703754
Representative plantOGRP54151221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.19e-59G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sawaki N, et al.
    A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice.
    Plant Cell Physiol., 2013. 54(4): p. 506-17
    [PMID:23324170]