PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G016079_P01
Common NameLOC103645147
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 195aa    MW: 20952.5 Da    PI: 10.9361
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G016079_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.86.2e-142977254
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                        y+GVr +  +grW+Ae+r+p +   r++ ++g+f t  +Aa a++aa  +++
  GRMZM2G016079_P01 29 EYTGVRLRQ-WGRWAAEVRVPGT---RQKLWIGTFETDRQAALAYDAAVFCFY 77
                       69****998.**********833...59*********99*********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.82E-152880IPR016177DNA-binding domain
CDDcd000181.45E-172892No hitNo description
PROSITE profilePS5103218.4792990IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-212988IPR001471AP2/ERF domain
PfamPF008472.3E-92976IPR001471AP2/ERF domain
SMARTSM003801.6E-182996IPR001471AP2/ERF domain
PRINTSPR003677.7E-73041IPR001471AP2/ERF domain
PRINTSPR003677.7E-75268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MTTTSSSRSS QAALAETRPP QKQQQQSSEY TGVRLRQWGR WAAEVRVPGT RQKLWIGTFE  60
TDRQAALAYD AAVFCFYGVH LPRRRRFNCP AAPRPDIPAW VRVQLNVASV KAIAERHARV  120
VDARLPPLVA AAGAGGPSAG GGASAPPPGD DRTDGMDDGE ALVAGASAAD ESLCSVPPLR  180
RRRRTSARRP EPGES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179184RRRRRT
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G016079
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G016079_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008666482.11e-137ethylene-responsive transcription factor ERF013
TrEMBLA0A1D6KJ581e-136A0A1D6KJ58_MAIZE; Uncharacterized protein
TrEMBLA0A317Y0A21e-136A0A317Y0A2_MAIZE; Ethylene-responsive transcription factor ERF016
STRINGGRMZM2G016079_P011e-137(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.11e-18ERF family protein