PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G016039_P03
Common NameZEAMMB73_923404, Zm.21095
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 163aa    MW: 16588.6 Da    PI: 7.5875
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G016039_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-1084111330
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                HLH   3 rahnerErrRRdriNsafeeLrellPka 30 
                        ++h+e+ErrRR+riN  +++Lr+++P +
  GRMZM2G016039_P03  84 KSHSEAERRRRERINAHLATLRTMVPCS 111
                        58************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.85E-979125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.72881130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-884111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-985112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0009001anatomyfruit
PO:0009066anatomyanther
PO:0009089anatomyendosperm
PO:0020127anatomyprimary root
PO:0001007developmental stagepollen development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007015developmental stageradicle emergence stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MDDIGSVPFA DAGLLDGFYG GSHGHGGDYG LLASQLGAGA GASSTSPAIL DGSVPLVDAA  60
ASAEEATRRK GDHLQDDKAA MALKSHSEAE RRRRERINAH LATLRTMVPC SDKVSASVSL  120
SCSLSVVTCP SARMGVLGAD AVAAGGRLHQ RAGLGLPVHC RRG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18994ERRRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.210950.0glume
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G016039
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G016039_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0844480.0BT084448.2 Zea mays full-length cDNA clone ZM_BFb0115J18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457128.15e-33transcription factor bHLH30
TrEMBLA0A3L6FN232e-64A0A3L6FN23_MAIZE; Transcription factor bHLH30
STRINGGRMZM2G016039_P012e-66(Zea mays)
STRINGGRMZM2G166642_P012e-66(Zea mays)