PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G016039_P01
Common NameZEAMMB73_923404, Zm.21095
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 273aa    MW: 28280.8 Da    PI: 7.0103
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G016039_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.2e-1384130354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h+e+ErrRR+riN  +++Lr+++P +      K++Ka++L +++ ++k+L
  GRMZM2G016039_P01  84 KSHSEAERRRRERINAHLATLRTMVPCS-----DKMDKAAVLAEVITHVKKL 130
                        58*************************8.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.75181130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-1184130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-1585132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-1485143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-1287136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.34E-594131No hitNo description
Gene3DG3DSA:3.30.70.2603.4E-4174224No hitNo description
SuperFamilySSF550211.19E-5174244No hitNo description
CDDcd048731.34E-4174240No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDDIGSVPFA DAGLLDGFYG GSHGHGGDYG LLASQLGAGA GASSTSPAIL DGSVPLVDAA  60
ASAEEATRRK GDHLQDDKAA MALKSHSEAE RRRRERINAH LATLRTMVPC SDKMDKAAVL  120
AEVITHVKKL KSTAAHIRDR CAAVPADADD VVVELVHGGA APPSAGGGVL VRATLSCDDG  180
ADVFADVRHA LRPLRLSVVG SEVTTLGGRV RFTFLITSST CGDVGAVVVD SVRQALQSVL  240
DRANSALEFA PRASLLNKRR RVSTFESSSS SSA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18994ERRRRE
2257261KRRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.210950.0glume
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G016039
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G016039_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0844480.0BT084448.2 Zea mays full-length cDNA clone ZM_BFb0115J18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457128.11e-123transcription factor bHLH30
TrEMBLA0A3L6FN230.0A0A3L6FN23_MAIZE; Transcription factor bHLH30
STRINGGRMZM2G016039_P010.0(Zea mays)
STRINGGRMZM2G166642_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-23bHLH family protein