PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G015666_P01
Common NamebHLH33, Zm.20566
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 333aa    MW: 35306.8 Da    PI: 7.1112
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G015666_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.4e-13120171155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r+ h ++Er+RR+++N+ ++ Lr+l+P+a   + ++ + a+i+  A++++k+L+
  GRMZM2G015666_P01 120 QRMIHIAVERNRRKQMNEHLAALRSLMPPA---HTQRGDQASIVGGAINFVKELE 171
                        6999**************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.54E-14118175No hitNo description
Gene3DG3DSA:4.10.280.101.7E-13118175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-17119187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.205119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-11120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MALEAVVLSQ SQFQQGSRFG CGAMAAGGAW SDLLFSGTEG LFEMGGAAGR GWNAAASSPP  60
QLLQELGDNG AAGSLPVASA GSASGGAGQD APAMAAAAAS GRRKRRRMRP VKNEEEVESQ  120
RMIHIAVERN RRKQMNEHLA ALRSLMPPAH TQRGDQASIV GGAINFVKEL EQLLQSLEAR  180
RRSPQCAAYA VDPDDAGPFA DFLTFPQYSM CAVIAAPENT GHHREGGAVA EQEASGSKPS  240
AVADVEATMV ESHANLRVLS RRRPRQLLRL VLGLQGHRLT VLHLNMSSGA HMVLYSFSLK  300
VEDDCQLTSV GEIAAAAHHI VEKINEEQNK AAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102106RKRRR
2120131RMIHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.205660.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G015666
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G015666_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9722040.0EU972204.1 Zea mays clone 377384 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151793.10.0uncharacterized protein LOC100285428
TrEMBLB6U4N90.0B6U4N9_MAIZE; BHLH transcription factor
STRINGGRMZM2G015666_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.18e-53bHLH family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]