PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G015080_P02
Common NameLOC100274320
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 530aa    MW: 56167.6 Da    PI: 6.5992
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G015080_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS244.34.8e-753085292233
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilk 92 
                         +lLl+cAeav++++l  a+++L ++ ela+p g+++qR+aayf+eA++ar+++s+ +ly+ lpp + +  + + +++aa+++f+ +sP++k
  GRMZM2G015080_P02 308 LTLLLQCAEAVNADNLDDAHQTLLEIAELATPFGTSTQRVAAYFAEAMSARVVSSCLGLYAPLPPGSPAAARlHGRVAAAFQVFNGISPFVK 399
                        579************************************************************77666655548899999************ PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                        fsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g+    s e+le+tg+rL++fA++lg+pfef + v +
  GRMZM2G015080_P02 400 FSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMEALEATGKRLSDFADTLGLPFEFCA-VDE 486
                        *********************************************************....***************************.799 PP

               GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvks 233
                        ++ ++++++L v ++Ea+aV++ +  h+l+d ++s ++    +L+l++s
  GRMZM2G015080_P02 487 KVGNVDPQKLGVTRREAVAVHWLH--HSLYDVTGSDSN----TLRLIQS 529
                        ***********************9..999988888888....7887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.857281530IPR005202Transcription factor GRAS
PfamPF035141.7E-72308529IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MGSSSVLLFP SSSSAAPSAP HSFPHSHATA IASSHSLLPP LPCSNPPPPL SSQDHVLIHY  60
IHQLDEQEAA TMVRKRPAPD MDLPPPRRHV TGDLSDVTAA AAAGGGPGAP SSASAQLPAL  120
PTQLHQLPPA FQHHAAEVDV PPQPHPPAHS QAGGEAPAST TAWVDGIIRD IIGSSGGGAV  180
SITQLIHNVR EIIHPCNPGL ASLLELRLRS LLAADPAPLP QQQRALLHGA PAAAAGLALP  240
LPPPLPDKRR HEPAPRCQQQ QQEEPHPAPQ SPKVPTAEET AAASAAAAKE RKEVQRRKQR  300
DEEGLHLLTL LLQCAEAVNA DNLDDAHQTL LEIAELATPF GTSTQRVAAY FAEAMSARVV  360
SSCLGLYAPL PPGSPAAARL HGRVAAAFQV FNGISPFVKF SHFTANQAIQ EAFEREERVH  420
IIDLDIMQGL QWPGLFHILA SRPGGPPRVR LTGLGASMEA LEATGKRLSD FADTLGLPFE  480
FCAVDEKVGN VDPQKLGVTR REAVAVHWLH HSLYDVTGSD SNTLRLIQSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1192915283239Protein SCARECROW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G015080
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in early stages of lateral root primordium formation, becoming restricted to the endodermal cell lineage at later stages. {ECO:0000269|PubMed:10948251}.
UniprotTISSUE SPECIFICITY: Expressed in the root endodermis and in a single file of cells through the quiescent center. {ECO:0000269|PubMed:10948251}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in establishing and maintaining the correct radial pattern in the root apical meristem. {ECO:0000269|PubMed:10948251}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G015080_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0427690.0BT042769.1 Zea mays full-length cDNA clone ZM_BFc0038F13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001336868.10.0uncharacterized LOC100274320
SwissprotQ9FUZ70.0SCR_MAIZE; Protein SCARECROW
TrEMBLA0A1D6EIU20.0A0A1D6EIU2_MAIZE; Protein SCARECROW
STRINGGRMZM2G015080_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-108GRAS family protein
Publications ? help Back to Top
  1. Lim J, et al.
    Conservation and diversification of SCARECROW in maize.
    Plant Mol. Biol., 2005. 59(4): p. 619-30
    [PMID:16244911]