PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G015080_P01
Common NameLOC100274320
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 678aa    MW: 72083.7 Da    PI: 6.6531
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G015080_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS406.23.2e-1243086702374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilk 92 
                         +lLl+cAeav++++l  a+++L ++ ela+p g+++qR+aayf+eA++ar+++s+ +ly+ lpp + +  + + +++aa+++f+ +sP++k
  GRMZM2G015080_P01 308 LTLLLQCAEAVNADNLDDAHQTLLEIAELATPFGTSTQRVAAYFAEAMSARVVSSCLGLYAPLPPGSPAAARlHGRVAAAFQVFNGISPFVK 399
                        579************************************************************77666655548899999************ PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                        fsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g+    s e+le+tg+rL++fA++lg+pfef + v +
  GRMZM2G015080_P01 400 FSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMEALEATGKRLSDFADTLGLPFEFCA-VDE 486
                        *********************************************************....***************************.799 PP

               GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                        ++ ++++++L v ++Ea+aV++ +  h+l+d ++s ++    +L+l+++l Pkvv++veq+++  s+sFl+rf++a++yysalfdsl+a+++
  GRMZM2G015080_P01 487 KVGNVDPQKLGVTRREAVAVHWLH--HSLYDVTGSDSN----TLRLIQRLAPKVVTMVEQDLSQ-SGSFLARFVDAIHYYSALFDSLDASYG 571
                        ***********************9..999999999999....********************98.899************************ PP

               GRAS 277 reseerikvErellgreivnvvacegaerrer.hetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                        ++s er++vE++ll+rei+nv+a  g +r      ++++Wre l ++GF++++l   aa+qa+lll +++sdgy++ ee+g+l lgWkd  L
  GRMZM2G015080_P01 572 EDSPERHVVEQQLLAREIRNVLAVGGPARAGAgGARFGSWREELARSGFRAASLAGGAAAQASLLLGMFPSDGYTLVEEKGALRLGWKDLCL 663
                        ****************************98652689******************************************************** PP

               GRAS 368 vsvSaWr 374
                        +++SaWr
  GRMZM2G015080_P01 664 LTASAWR 670
                        ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.953281650IPR005202Transcription factor GRAS
PfamPF035141.1E-121308670IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MGSSSVLLFP SSSSAAPSAP HSFPHSHATA IASSHSLLPP LPCSNPPPPL SSQDHVLIHY  60
IHQLDEQEAA TMVRKRPAPD MDLPPPRRHV TGDLSDVTAA AAAGGGPGAP SSASAQLPAL  120
PTQLHQLPPA FQHHAAEVDV PPQPHPPAHS QAGGEAPAST TAWVDGIIRD IIGSSGGGAV  180
SITQLIHNVR EIIHPCNPGL ASLLELRLRS LLAADPAPLP QQQRALLHGA PAAAAGLALP  240
LPPPLPDKRR HEPAPRCQQQ QQEEPHPAPQ SPKVPTAEET AAASAAAAKE RKEVQRRKQR  300
DEEGLHLLTL LLQCAEAVNA DNLDDAHQTL LEIAELATPF GTSTQRVAAY FAEAMSARVV  360
SSCLGLYAPL PPGSPAAARL HGRVAAAFQV FNGISPFVKF SHFTANQAIQ EAFEREERVH  420
IIDLDIMQGL QWPGLFHILA SRPGGPPRVR LTGLGASMEA LEATGKRLSD FADTLGLPFE  480
FCAVDEKVGN VDPQKLGVTR REAVAVHWLH HSLYDVTGSD SNTLRLIQRL APKVVTMVEQ  540
DLSQSGSFLA RFVDAIHYYS ALFDSLDASY GEDSPERHVV EQQLLAREIR NVLAVGGPAR  600
AGAGGARFGS WREELARSGF RAASLAGGAA AQASLLLGMF PSDGYTLVEE KGALRLGWKD  660
LCLLTASAWR PVQTPPCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.02916713380Protein SCARECROW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G015080
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in early stages of lateral root primordium formation, becoming restricted to the endodermal cell lineage at later stages. {ECO:0000269|PubMed:10948251}.
UniprotTISSUE SPECIFICITY: Expressed in the root endodermis and in a single file of cells through the quiescent center. {ECO:0000269|PubMed:10948251}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in establishing and maintaining the correct radial pattern in the root apical meristem. {ECO:0000269|PubMed:10948251}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G015080_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0427690.0BT042769.1 Zea mays full-length cDNA clone ZM_BFc0038F13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001336868.10.0uncharacterized LOC100274320
SwissprotQ9FUZ70.0SCR_MAIZE; Protein SCARECROW
TrEMBLA0A1D6EIU20.0A0A1D6EIU2_MAIZE; Protein SCARECROW
STRINGGRMZM2G015080_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Representative plantOGRP21831437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-169GRAS family protein
Publications ? help Back to Top
  1. Lim J, et al.
    Conservation and diversification of SCARECROW in maize.
    Plant Mol. Biol., 2005. 59(4): p. 619-30
    [PMID:16244911]