PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G015037_P02 | ||||||||
Common Name | LOC103634970, ZEAMMB73_102265, Zm.87410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 425aa MW: 44091.8 Da PI: 7.1681 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 108.9 | 7.5e-34 | 88 | 199 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec.eaesssssas.nss 86 +g+kd+hsk++T++g RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak ai+ l t ++++s+ ++s ++s++ ++ GRMZM2G015037_P02 88 TGRKDSHSKVCTARGTRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDRLETTlpaanAAPPSSSWtHPDSAENSDDqAQA 179 79**************************************************************9988544444333533333333330222 PP TCP 87 sg.................k 89 ++ + GRMZM2G015037_P02 180 ITvahtafdfpgadgflvpA 199 22555555555555555551 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.6E-29 | 88 | 173 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.936 | 90 | 148 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MGDASQSHSH SHSQHHGFQP QLLSFGGAGQ HHAHQFTAQA ASHLRPRGRG AVGAGGEAVA 60 TTSASRSRVR GGGGEAVAVQ GGHIARSTGR KDSHSKVCTA RGTRDRRVRL AAHTAIQFYD 120 VQDRLGYDRP SKAVDWLIKN AKDAIDRLET TLPAANAAPP SSSWTHPDSA ENSDDQAQAI 180 TVAHTAFDFP GADGFLVPAS LDSDTIKSFF PVAGTGGGEA EASSSATAAQ SSAMGYQSYT 240 PDLLSRTGGH SQELRLSLQS LPDPMFHHRS HGHGHGGDGS AQQALFPGAA SYSFGGGAAW 300 AEHAQSQRVA PWNAPDPGGG STGGYLLNVS QSQQAALGGQ SQFFFQRGPL QSSNQPSDSE 360 RGWPETVEAD NPMQHGGPTI GFAPGTSFSG IRIPTRIQGG EEHNGGSGNG DKPPPPPSVS 420 SASRQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-20 | 95 | 148 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-20 | 95 | 148 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G015037 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G015037_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971438 | 0.0 | EU971438.1 Zea mays clone 364731 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001353090.1 | 0.0 | transcription factor PCF5 | ||||
Refseq | XP_008655766.1 | 0.0 | transcription factor PCF5 | ||||
Refseq | XP_008655767.1 | 0.0 | transcription factor PCF5 | ||||
Swissprot | Q8LT07 | 1e-142 | PCF5_ORYSJ; Transcription factor PCF5 | ||||
TrEMBL | A0A3L6DMJ2 | 0.0 | A0A3L6DMJ2_MAIZE; Transcription factor PCF5 | ||||
TrEMBL | K7VR25 | 0.0 | K7VR25_MAIZE; Transcription factor TCP4 | ||||
STRING | GRMZM2G015037_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 5e-42 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G015037_P02 |
Entrez Gene | 103634970 |