PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G015037_P01
Common NameZEAMMB73_102265, Zm.87410
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 657aa    MW: 69551.5 Da    PI: 6.7982
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G015037_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.81.7e-33320431289
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec.eaesssssas.nss 86 
                        +g+kd+hsk++T++g RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak ai+ l  t      ++++s+   ++s ++s++ ++ 
  GRMZM2G015037_P01 320 TGRKDSHSKVCTARGTRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDRLETTlpaanAAPPSSSWtHPDSAENSDDqAQA 411
                        79**************************************************************9888544444333533333333330222 PP

                TCP  87 sg.................k 89 
                        ++                 +
  GRMZM2G015037_P01 412 ITvahtafdfpgadgflvpA 431
                        22444444454444444441 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.0E-29320403IPR005333Transcription factor, TCP
PROSITE profilePS5136929.936322380IPR017887Transcription factor TCP subgroup
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MLVWNDRTSV NLLEKDGLLA TFDEETANYF HGTDVICILC PRNPDILCNS EQRDTWNVQL  60
FRYIDGGDVF NVPNTSEEAA RAGIVSGIKQ PWPPPMEFEC LDLCMASDKL MIMVFYGFLA  120
LDYGLRRGGW KRIAGRGAAV AAAAKQAGDL DPRFYHRAPH GGGGGEGGGA QQDADEQRRQ  180
HHRLLQLHQQ VQQDQDPPPA PLFQLQHLQA AAAAAVRQRG GLLSAGYALL APMGDASQSH  240
SHSHSQHHGF QPQLLSFGGA GQHHAHQFTA QAASHLRPRG RGAVGAGGEA VATTSASRSR  300
VRGGGGEAVA VQGGHIARST GRKDSHSKVC TARGTRDRRV RLAAHTAIQF YDVQDRLGYD  360
RPSKAVDWLI KNAKDAIDRL ETTLPAANAA PPSSSWTHPD SAENSDDQAQ AITVAHTAFD  420
FPGADGFLVP ASLDSDTIKS FFPVAGTGGG EAEASSSATA AQSSAMGYQS YTPDLLSRTG  480
GHSQELRLSL QSLPDPMFHH RSHGHGHGGD GSAQQALFPG AASYSFGGGA AWAEHAQSQR  540
VAPWNAPDPG GGSTGGYLLN VSQSQQAALG GQSQFFFQRG PLQSSNQPSD SERGWPETVE  600
ADNPMQHGGP TIGFAPGTSF SGIRIPTRIQ GGEEHNGGSG NGDKPPPPPS VSSASRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-20327380154Putative transcription factor PCF6
5zkt_B5e-20327380154Putative transcription factor PCF6
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G015037
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G015037_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9714380.0EU971438.1 Zea mays clone 364731 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001353090.10.0transcription factor PCF5
RefseqXP_008655766.10.0transcription factor PCF5
RefseqXP_008655767.10.0transcription factor PCF5
SwissprotA2WM141e-157PCF5_ORYSI; Transcription factor PCF5
TrEMBLA0A3L6DMJ20.0A0A3L6DMJ2_MAIZE; Transcription factor PCF5
TrEMBLK7VR250.0K7VR25_MAIZE; Transcription factor TCP4
STRINGGRMZM2G015037_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.35e-40TCP family protein