PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G014902_P01
Common NameLOC100281091, ZEAMMB73_800254
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 720aa    MW: 78785.2 Da    PI: 6.3802
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G014902_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.2e-152468147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       r rWT+ E++++++a k++G   W +I +++g ++t+ q++s+ qk+
  GRMZM2G014902_P01 24 RERWTEAEHKRFLEALKLYGRA-WQRIEEHVG-TKTAVQIRSHAQKF 68
                       78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.84E-161874IPR009057Homeodomain-like
PROSITE profilePS5129419.1471973IPR017930Myb domain
TIGRFAMsTIGR015571.6E-162271IPR006447Myb domain, plants
SMARTSM007176.5E-122371IPR001005SANT/Myb domain
PfamPF002491.5E-122467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-82464IPR009057Homeodomain-like
CDDcd001671.03E-82669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MEVNSSGEET VVKVRKPYTI TKQRERWTEA EHKRFLEALK LYGRAWQRIE EHVGTKTAVQ  60
IRSHAQKFFT KLEKEAMNNG TSPGQAHDID IPPPRPKRKP NSPYPRKSCL SSETQTKELP  120
NDKSTKPNMP LSNGHVKMVG DASLQNFQRK ELSEKGSRSE VLNLFRDAPS ASFSSVNKSS  180
SNHGAPRRTE ASKTESRDMS IMENNSFNPN TQEDVKVISD QEMERLNGIQ IRSKCEHSHE  240
GYLDISTQQM KLMPKSVETT YVDEQTARAS HTLAESDGTA SIPVTVPEGT HPDQTSDQVG  300
INGSMNPCIH PMVSADPKFG SSATPQTFPH NYAAFAPMMQ CNCNQDTYRS FTNMSSTFSS  360
MLVSTLLSNP AIHAAARLAA SYWPAAEGNT PIDPNQENPA DGVQGRNIGS PPSMVSIVAA  420
TVAAASAWWA TQGLLPFFAP PVAFPFVPAP SAAFPTVDVP RPSEKDRDCP AENAQIECQE  480
ARKQVQFEGL RIAASSESDG SGKGEVSLHT ELKLSPAQNA DATPTTGAGT NDAFRNKKKQ  540
DRSSCGSNTP SSSDVDAGNV PEEDNANEKA KQASCSNSSA GDTNHRRFRS NGSTSDSWKE  600
VSEEGRLAFD ALFSREKLPQ SFSPPQAVDS KEVAKEEEDE VTTVAVDLNK NATSIDHDDL  660
DTMDEPRASF PNELSHLKLK SRRTGFKPYK RCSVEAKENR VPASDMVGTK RIRLDSEAST
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.943090.0aerial organ| cell lignification| ear| endosperm| leaf| meristem| pollen| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G014902
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G014902_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9555440.0EU955544.1 Zea mays clone 1536169 LHY protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001357639.10.0LHY protein
RefseqXP_008677180.10.0LHY protein isoform X1
RefseqXP_008677181.10.0LHY protein isoform X1
RefseqXP_008677183.10.0LHY protein isoform X1
RefseqXP_020407119.10.0LHY protein isoform X1
TrEMBLK7U1560.0K7U156_MAIZE; Circadian clock associated1
STRINGGRMZM2G014902_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60313447
Representative plantOGRP1297144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.19e-41circadian clock associated 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]