PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G014534_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 272aa    MW: 28954.7 Da    PI: 5.7543
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G014534_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.6e-131559143
                       TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksr 43
                       +g+WT+eEd  lv+ +k++Gg+  +W+  ++  g++R++k+c++r
  GRMZM2G014534_P01 15 KGPWTEEEDRTLVEHIKRHGGHvsSWRDLPKAAGLNRCGKSCRLR 59
                       79*****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-14761IPR009057Homeodomain-like
SuperFamilySSF466891.5E-9959IPR009057Homeodomain-like
PROSITE profilePS5129416.4271067IPR017930Myb domain
SMARTSM007171.7E-41465IPR001005SANT/Myb domain
PfamPF002493.1E-111559IPR001005SANT/Myb domain
CDDcd001671.76E-61759No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGRSPCCCHD AGVKKGPWTE EEDRTLVEHI KRHGGHVSSW RDLPKAAGLN RCGKSCRLRK  60
KLVRMGIDPV THQRLPPEDI IASPMAILSA AASLGGLHSA LMQVQALQLL LQAVNNDGGR  120
SAAAGGLIMP DILNAAADNA ILINNASRSS VVPSLQDQTN LPAASHANYY GSPDHHLSSN  180
IASFADQQHD DASAPVVGCA YAEPLAAALV SAAYPQEVAA AAEGWPVQGF AELLSGPIEM  240
QVQTKARTCS LEEDDQDDFW KDMLLESSRL PL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G014534
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G014534_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794329e-74HF679432.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB26 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105856.18e-48transcription factor MYB2
TrEMBLA0A1D6E1H10.0A0A1D6E1H1_MAIZE; MYB-related-transcription factor 36
STRINGGRMZM2G014534_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.26e-22myb domain protein 9